KEGG   PATHWAY: baff00020
Entry
baff00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bombus affinis (rusty patched bumble bee)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
baff00020  Citrate cycle (TCA cycle)
baff00020

Module
baff_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:baff00020]
baff_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:baff00020]
baff_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:baff00020]
baff_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:baff00020]
baff_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:baff00020]
Other DBs
GO: 0006099
Organism
Bombus affinis (rusty patched bumble bee) [GN:baff]
Gene
126920917  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
126920918  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
126915380  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
126923024  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
126923065  aconitate hydratase, mitochondrial-like isoform X1 [KO:K01681] [EC:4.2.1.3]
126923877  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
126918051  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
126919761  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
126921403  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
126915416  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
126919926  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
126923399  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
126922240  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
126921133  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
126914718  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126923598  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126923816  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126923818  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126916143  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
126916150  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
126916503  uncharacterized protein LOC126916503 [KO:K00235] [EC:1.3.5.1]
126916920  uncharacterized protein LOC126916920 [KO:K00235] [EC:1.3.5.1]
126923402  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126921395  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
126925025  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
126924905  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
126914069  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
126925054  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
126919422  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126922751  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126922358  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
126916481  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
126918567  uncharacterized protein LOC126918567 [KO:K00161] [EC:1.2.4.1]
126920858  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
126918769  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
126915806  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
126917252  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
126915079  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
baff00010  Glycolysis / Gluconeogenesis
baff00053  Ascorbate and aldarate metabolism
baff00061  Fatty acid biosynthesis
baff00062  Fatty acid elongation
baff00071  Fatty acid degradation
baff00190  Oxidative phosphorylation
baff00220  Arginine biosynthesis
baff00250  Alanine, aspartate and glutamate metabolism
baff00280  Valine, leucine and isoleucine degradation
baff00350  Tyrosine metabolism
baff00470  D-Amino acid metabolism
baff00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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