KEGG   PATHWAY: bgh00020
Entry
bgh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Blastomyces gilchristii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgh00020  Citrate cycle (TCA cycle)
bgh00020

Module
bgh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgh00020]
bgh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgh00020]
bgh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgh00020]
bgh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgh00020]
bgh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgh00020]
Other DBs
GO: 0006099
Organism
Blastomyces gilchristii [GN:bgh]
Gene
BDBG_05332  2-methylcitrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
BDBG_05847  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
BDBG_07934  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
BDBG_07935  ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
BDBG_00324  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
BDBG_02000  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
BDBG_00908  isocitrate dehydrogenase [NAD] subunit 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
BDBG_01712  isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
BDBG_07244  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BDBG_05059  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
BDBG_05112  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDBG_00232  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
BDBG_03637  succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
BDBG_09291  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
BDBG_16050  succinate dehydrogenase (ubiquinone) flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
BDBG_16350  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
BDBG_03409  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
BDBG_01291  succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [KO:K00236]
BDBG_09317  succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [KO:K00236]
BDBG_06453  succinate dehydrogenase (ubiquinone) membrane anchor subunit [KO:K00237]
BDBG_03842  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
BDBG_05730  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
BDBG_09424  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
BDBG_01841  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BDBG_04373  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BDBG_06122  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BDBG_09198  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
BDBG_05733  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgh00010  Glycolysis / Gluconeogenesis
bgh00053  Ascorbate and aldarate metabolism
bgh00061  Fatty acid biosynthesis
bgh00062  Fatty acid elongation
bgh00071  Fatty acid degradation
bgh00190  Oxidative phosphorylation
bgh00220  Arginine biosynthesis
bgh00250  Alanine, aspartate and glutamate metabolism
bgh00280  Valine, leucine and isoleucine degradation
bgh00350  Tyrosine metabolism
bgh00470  D-Amino acid metabolism
bgh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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