KEGG   PATHWAY: bhn00020
Entry
bhn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bartonella henselae BM1374163
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhn00020  Citrate cycle (TCA cycle)
bhn00020

Module
bhn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bhn00020]
bhn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhn00020]
bhn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bhn00020]
bhn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhn00020]
Other DBs
GO: 0006099
Organism
Bartonella henselae BM1374163 [GN:bhn]
Gene
PRJBM_00651  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PRJBM_00116  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PRJBM_00974  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PRJBM_01641  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PRJBM_01640  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PRJBM_00589  pdhD1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PRJBM_01639  pdhD2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PRJBM_01642  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PRJBM_01643  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PRJBM_01564  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PRJBM_01563  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PRJBM_01566  sdhC; succinate dehydrogenase cytochrome b560 subunit [KO:K00241]
PRJBM_01565  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
PRJBM_01338  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PRJBM_01644  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PRJBM_00586  pdhA; pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
PRJBM_00587  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
PRJBM_00588  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhn00010  Glycolysis / Gluconeogenesis
bhn00061  Fatty acid biosynthesis
bhn00071  Fatty acid degradation
bhn00190  Oxidative phosphorylation
bhn00220  Arginine biosynthesis
bhn00250  Alanine, aspartate and glutamate metabolism
bhn00280  Valine, leucine and isoleucine degradation
bhn00470  D-Amino acid metabolism
bhn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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