KEGG   PATHWAY: bpse00920
Entry
bpse00920                   Pathway                                
Name
Sulfur metabolism - Burkholderia pseudomallei MSHR305
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bpse00920  Sulfur metabolism
bpse00920

Module
bpse_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bpse00920]
Other DBs
GO: 0006790
Organism
Burkholderia pseudomallei MSHR305 [GN:bpse]
Gene
BDL_1630  sulfate ABC transporter, sulfate-binding family protein [KO:K02048]
BDL_366  sulfate ABC transporter, sulfate-binding family protein [KO:K23163]
BDL_365  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
BDL_364  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
BDL_363  cysA; sulfate ABC transporter, ATP-binding family protein [KO:K02045] [EC:7.3.2.3]
BDL_4923  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
BDL_4921  binding--dependent transport system inner membrane component family protein [KO:K15552]
BDL_4922  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
BDL_4924  taurine catabolism dioxygenase TauD, TfdA family protein [KO:K03119] [EC:1.14.11.17]
BDL_4217  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BDL_769  ABC transporter, substrate-binding, aliphatic sulfonates family protein [KO:K15553]
BDL_1908  bacterial extracellular solute-binding, 3 family protein [KO:K15553]
BDL_351  NMT1-like family protein [KO:K15553]
BDL_387  binding--dependent transport system inner membrane component family protein [KO:K15554]
BDL_348  binding--dependent transport system inner membrane component family protein [KO:K15554]
BDL_1906  binding--dependent transport system inner membrane component family protein [KO:K15554]
BDL_386  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BDL_349  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BDL_1907  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
BDL_388  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BDL_4735  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
BDL_1077  cysN; sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
BDL_3327  cysD; sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
BDL_1078  cysD; sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
BDL_5333  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
BDL_3141  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
BDL_3311  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
BDL_212  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
BDL_1079  adenylylsulfate reductase, thioredoxin dependent family protein [KO:K00390] [EC:1.8.4.8 1.8.4.10]
BDL_5775  molybdopterin oxidoreductase Fe4S4 domain protein [KO:K21307] [EC:1.8.5.6]
BDL_5776  4Fe-4S dicluster domain protein [KO:K21308]
BDL_5777  DMSO reductase anchor subunit family protein [KO:K21309]
BDL_4532  FAD binding domain protein [KO:K00380] [EC:1.8.1.2]
BDL_4771  flavodoxin family protein [KO:K00380] [EC:1.8.1.2]
BDL_701  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
BDL_1081  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
BDL_108  FAD dependent oxidoreductase family protein [KO:K17218] [EC:1.8.5.4]
BDL_5165  rhodanese-like domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BDL_4646  bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]
BDL_5870  hypothetical protein [KO:K00640] [EC:2.3.1.30]
BDL_3295  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BDL_1795  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BDL_5044  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
BDL_3853  sfnG; dimethyl sulfone monooxygenase SfnG [KO:K17228] [EC:1.14.14.35]
BDL_3501  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
BDL_3965  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
BDL_2938  hypothetical protein [KO:K20035] [EC:1.3.99.41]
BDL_1356  hypothetical protein [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bpse00260  Glycine, serine and threonine metabolism
bpse00270  Cysteine and methionine metabolism
bpse00680  Methane metabolism
bpse00720  Carbon fixation pathways in prokaryotes
KO pathway
ko00920   
LinkDB

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