KEGG   PATHWAY: bpus00020
Entry
bpus00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus pumilus SH-B9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpus00020  Citrate cycle (TCA cycle)
bpus00020

Module
bpus_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpus00020]
bpus_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpus00020]
bpus_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpus00020]
bpus_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpus00020]
bpus_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpus00020]
Other DBs
GO: 0006099
Organism
Bacillus pumilus SH-B9 [GN:bpus]
Gene
UP12_09460  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
UP12_13085  citrate synthase [KO:K01647] [EC:2.3.3.1]
UP12_08750  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
UP12_13080  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UP12_09530  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
UP12_09525  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
UP12_07075  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UP12_02615  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UP12_06230  acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
UP12_10895  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UP12_07840  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
UP12_07835  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
UP12_12820  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
UP12_12815  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
UP12_12825  succinate dehydrogenase [KO:K00241]
UP12_15515  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
UP12_13075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UP12_07190  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
UP12_13745  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UP12_07060  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
UP12_07065  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
UP12_02610  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
UP12_06225  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
UP12_07070  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpus00010  Glycolysis / Gluconeogenesis
bpus00053  Ascorbate and aldarate metabolism
bpus00061  Fatty acid biosynthesis
bpus00071  Fatty acid degradation
bpus00190  Oxidative phosphorylation
bpus00220  Arginine biosynthesis
bpus00250  Alanine, aspartate and glutamate metabolism
bpus00280  Valine, leucine and isoleucine degradation
bpus00350  Tyrosine metabolism
bpus00470  D-Amino acid metabolism
bpus00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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