KEGG   PATHWAY: brf00020
Entry
brf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas sp. MF30-B
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brf00020  Citrate cycle (TCA cycle)
brf00020

Module
brf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brf00020]
brf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brf00020]
brf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brf00020]
brf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brf00020]
brf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brf00020]
Other DBs
GO: 0006099
Organism
Brevundimonas sp. MF30-B [GN:brf]
Gene
E4M01_09270  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E4M01_01360  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E4M01_02830  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E4M01_04300  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E4M01_04305  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E4M01_00020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4M01_00615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4M01_09120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4M01_04295  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E4M01_04290  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E4M01_04405  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E4M01_04415  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E4M01_04395  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E4M01_04400  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E4M01_09955  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E4M01_04805  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E4M01_10970  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
E4M01_09140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E4M01_09135  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
E4M01_09125  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brf00010  Glycolysis / Gluconeogenesis
brf00053  Ascorbate and aldarate metabolism
brf00061  Fatty acid biosynthesis
brf00071  Fatty acid degradation
brf00190  Oxidative phosphorylation
brf00220  Arginine biosynthesis
brf00250  Alanine, aspartate and glutamate metabolism
brf00280  Valine, leucine and isoleucine degradation
brf00350  Tyrosine metabolism
brf00470  D-Amino acid metabolism
brf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system