KEGG   PATHWAY: cjc00020
Entry
cjc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Callithrix jacchus (white-tufted-ear marmoset)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjc00020  Citrate cycle (TCA cycle)
cjc00020

Module
cjc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjc00020]
cjc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cjc00020]
cjc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjc00020]
cjc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cjc00020]
cjc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjc00020]
Other DBs
GO: 0006099
Organism
Callithrix jacchus (white-tufted-ear marmoset) [GN:cjc]
Gene
100413462  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
100405725  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
100415290  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100412501  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
100414768  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100391590  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100413152  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100403538  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100405727  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100385269  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100386666  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X5 [KO:K00164] [EC:1.2.4.2]
100410726  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
100405938  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
100399824  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100386944  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100400096  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100389121  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100400483  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
100403702  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
100386976  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
100413949  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
103788262  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
100404499  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
100402453  LOW QUALITY PROTEIN: fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
100402890  MDH1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
100388491  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
100407619  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
100401792  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100404441  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
100404870  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X2 [KO:K01596] [EC:4.1.1.32]
100403644  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100400144  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100403745  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100397634  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
100412039  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjc00010  Glycolysis / Gluconeogenesis
cjc00053  Ascorbate and aldarate metabolism
cjc00061  Fatty acid biosynthesis
cjc00062  Fatty acid elongation
cjc00071  Fatty acid degradation
cjc00190  Oxidative phosphorylation
cjc00220  Arginine biosynthesis
cjc00250  Alanine, aspartate and glutamate metabolism
cjc00280  Valine, leucine and isoleucine degradation
cjc00350  Tyrosine metabolism
cjc00470  D-Amino acid metabolism
cjc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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