KEGG   PATHWAY: cpep00020
Entry
cpep00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cucurbita pepo subsp. pepo (vegetable marrow)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpep00020  Citrate cycle (TCA cycle)
cpep00020

Module
cpep_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpep00020]
cpep_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpep00020]
cpep_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpep00020]
Other DBs
GO: 0006099
Organism
Cucurbita pepo subsp. pepo (vegetable marrow) [GN:cpep]
Gene
111779203  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
111777415  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
111807433  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111795857  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
111784910  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
111779264  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
111780398  ATP-citrate synthase alpha chain protein 2 isoform X1 [KO:K01648] [EC:2.3.3.8]
111798753  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111807639  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111798324  ATP-citrate synthase alpha chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
111802379  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
111806037  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
111782002  aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111786127  aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111785745  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111803950  aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111792961  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
111811641  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
111779489  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
111808785  cytosolic isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
111782057  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
111777810  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111781881  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111804417  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111803747  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111795917  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111779642  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111804741  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111808239  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111788606  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
111797006  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111778603  dihydrolipoyl dehydrogenase, mitochondrial-like isoform X1 [KO:K00382] [EC:1.8.1.4]
111807385  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111790770  dihydrolipoyl dehydrogenase 1, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
111800316  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
111783372  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111802423  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111778409  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111810124  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
111793283  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111790698  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
111791586  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
111789428  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
111791680  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111779359  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111790231  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
111807156  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
111781951  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
111779577  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111792270  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
111803283  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
111799161  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111809931  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111788715  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
111781678  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111804276  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111799932  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111810304  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111798266  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111806885  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111806057  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111807184  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
111778688  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111801954  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
111807036  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
111788553  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like isoform X1 [KO:K00627] [EC:2.3.1.12]
111809724  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
111802232  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111790842  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
111797543  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111799980  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
111789328  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpep00010  Glycolysis / Gluconeogenesis
cpep00053  Ascorbate and aldarate metabolism
cpep00061  Fatty acid biosynthesis
cpep00062  Fatty acid elongation
cpep00071  Fatty acid degradation
cpep00190  Oxidative phosphorylation
cpep00220  Arginine biosynthesis
cpep00250  Alanine, aspartate and glutamate metabolism
cpep00280  Valine, leucine and isoleucine degradation
cpep00350  Tyrosine metabolism
cpep00470  D-Amino acid metabolism
cpep00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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