KEGG   PATHWAY: cvn00240
Entry
cvn00240                    Pathway                                
Name
Pyrimidine metabolism - Crassostrea virginica (eastern oyster)
Class
Metabolism; Nucleotide metabolism
Pathway map
cvn00240  Pyrimidine metabolism
cvn00240

Module
cvn_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:cvn00240]
cvn_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cvn00240]
cvn_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cvn00240]
cvn_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cvn00240]
cvn_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cvn00240]
Other DBs
GO: 0006220 0006213
Organism
Crassostrea virginica (eastern oyster) [GN:cvn]
Gene
111134478  CAD protein-like isoform X1 [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
111134405  dihydroorotate dehydrogenase (quinone), mitochondrial-like isoform X1 [KO:K00254] [EC:1.3.5.2]
111132766  LOW QUALITY PROTEIN: uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
111118263  LOW QUALITY PROTEIN: UMP-CMP kinase-like [KO:K13800] [EC:2.7.4.14]
111111324  UMP-CMP kinase 2, mitochondrial-like [KO:K13809] [EC:2.7.4.14]
111136057  nucleoside diphosphate kinase 7-like [KO:K00940] [EC:2.7.4.6]
111126109  nucleoside diphosphate kinase A-like [KO:K00940] [EC:2.7.4.6]
111129228  nucleoside diphosphate kinase 6-like [KO:K00940] [EC:2.7.4.6]
111103614  LOW QUALITY PROTEIN: adenylate kinase 9-like [KO:K18533] [EC:2.7.4.3 2.7.4.6]
111099427  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
111120483  soluble calcium-activated nucleotidase 1-like [KO:K12304] [EC:3.6.1.6]
111129901  LOW QUALITY PROTEIN: ectonucleoside triphosphate diphosphohydrolase 5-like [KO:K01511] [EC:3.6.1.6]
111135133  bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]-like [KO:K01518] [EC:3.6.1.17]
111104089  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
111104101  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
111120502  uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
111123054  uridine-cytidine kinase 2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
111126502  uridine-cytidine kinase 2-like isoform X1 [KO:K00876] [EC:2.7.1.48]
111135218  cytosolic purine 5'-nucleotidase-like [KO:K01081] [EC:3.1.3.5]
111135848  uncharacterized protein LOC111135848 [KO:K01081] [EC:3.1.3.5]
111100897  cytosolic purine 5'-nucleotidase-like isoform X1 [KO:K01081] [EC:3.1.3.5]
111118131  5'(3')-deoxyribonucleotidase, cytosolic type-like [KO:K01081] [EC:3.1.3.5]
111118546  5'(3')-deoxyribonucleotidase, cytosolic type-like [KO:K01081] [EC:3.1.3.5]
111113806  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
111099490  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
111099684  5'-nucleotidase-like isoform X1 [KO:K19970] [EC:3.1.3.5]
111100573  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
111101288  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
111103017  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
111122716  uridine phosphorylase 1-like [KO:K00757] [EC:2.4.2.3]
111099975  uridine phosphorylase 2-like [KO:K00757] [EC:2.4.2.3]
111122585  pseudouridine-metabolizing bifunctional protein C1861.05-like [KO:K16330] [EC:4.2.1.70 2.7.1.83]
111138142  pseudouridine-metabolizing bifunctional protein C1861.05-like [KO:K16330] [EC:4.2.1.70 2.7.1.83]
111126661  7-methylguanosine phosphate-specific 5'-nucleotidase A-like isoform X1 [KO:K24242] [EC:3.1.3.91]
111136709  cytidine deaminase-like [KO:K01489] [EC:3.5.4.5]
111138152  cytidine deaminase-like [KO:K01489] [EC:3.5.4.5]
111138297  cytidine deaminase-like [KO:K01489] [EC:3.5.4.5]
111124500  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
111127434  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
111122251  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
111118358  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
111135489  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
111135490  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
111123736  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
111125470  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
111135526  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
111135530  thymidylate kinase-like [KO:K00943] [EC:2.7.4.9]
111105981  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
111105982  deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like isoform X1 [KO:K01520] [EC:3.6.1.23]
111108617  deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like [KO:K01520] [EC:3.6.1.23]
111109808  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
111102818  thymidine phosphorylase-like [KO:K00758] [EC:2.4.2.4]
111103795  thymidine phosphorylase-like isoform X1 [KO:K00758] [EC:2.4.2.4]
111103796  thymidine phosphorylase-like [KO:K00758] [EC:2.4.2.4]
111130674  thymidine kinase 2, mitochondrial-like [KO:K00857] [EC:2.7.1.21]
111106556  thymidine kinase 2, mitochondrial-like isoform X1 [KO:K00857] [EC:2.7.1.21]
111106705  thymidine kinase 2, mitochondrial-like isoform X1 [KO:K00857] [EC:2.7.1.21]
111121137  LOW QUALITY PROTEIN: thymidine kinase, cytosolic-like [KO:K00857] [EC:2.7.1.21]
111106799  thymidine kinase 2, mitochondrial-like [KO:K00857] [EC:2.7.1.21]
111106974  thymidine kinase 2, mitochondrial-like isoform X1 [KO:K00857] [EC:2.7.1.21]
111127815  thymidine kinase 2, mitochondrial-like [KO:K00857] [EC:2.7.1.21]
111118028  thymidine kinase 2, mitochondrial-like [KO:K00857] [EC:2.7.1.21]
111104244  thymidylate synthase-like [KO:K00560] [EC:2.1.1.45]
111119483  dihydropyrimidine dehydrogenase [NADP(+)]-like [KO:K00207] [EC:1.3.1.2]
111127104  LOW QUALITY PROTEIN: dihydropyrimidinase-like [KO:K01464] [EC:3.5.2.2]
111132068  beta-ureidopropionase-like isoform X1 [KO:K01431] [EC:3.5.1.6]
111136918  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
cvn00030  Pentose phosphate pathway
cvn00220  Arginine biosynthesis
cvn00250  Alanine, aspartate and glutamate metabolism
cvn00280  Valine, leucine and isoleucine degradation
cvn00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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