KEGG   PATHWAY: dam00020
Entry
dam00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Diachasma alloeum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dam00020  Citrate cycle (TCA cycle)
dam00020

Module
dam_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dam00020]
dam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dam00020]
dam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dam00020]
dam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dam00020]
dam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dam00020]
Other DBs
GO: 0006099
Organism
Diachasma alloeum [GN:dam]
Gene
107047778  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
107039886  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
107037520  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
107042359  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
107041405  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
107040734  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
107041769  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
107039937  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
107041202  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
107046179  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
107043232  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
107035693  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107036899  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107039576  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107035545  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107035562  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107037382  succinate dehydrogenase [ubiquinone] iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
107037391  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
107040308  succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
107048032  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
107047872  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
107037769  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107043395  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107039844  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107040010  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107037943  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
107047487  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
107043212  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
107044662  pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
107038002  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107042801  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
107038328  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dam00010  Glycolysis / Gluconeogenesis
dam00053  Ascorbate and aldarate metabolism
dam00061  Fatty acid biosynthesis
dam00062  Fatty acid elongation
dam00071  Fatty acid degradation
dam00190  Oxidative phosphorylation
dam00220  Arginine biosynthesis
dam00250  Alanine, aspartate and glutamate metabolism
dam00280  Valine, leucine and isoleucine degradation
dam00350  Tyrosine metabolism
dam00470  D-Amino acid metabolism
dam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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