KEGG   PATHWAY: fli00020
Entry
fli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bernardetia litoralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fli00020  Citrate cycle (TCA cycle)
fli00020

Module
fli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fli00020]
fli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fli00020]
fli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fli00020]
fli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fli00020]
fli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fli00020]
Other DBs
GO: 0006099
Organism
Bernardetia litoralis [GN:fli]
Gene
Fleli_0981  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Fleli_2493  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Fleli_0310  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Fleli_3692  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Fleli_1168  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Fleli_0218  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
Fleli_3779  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fleli_1910  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fleli_2540  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Fleli_3992  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Fleli_2687  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Fleli_2686  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Fleli_2688  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Fleli_3025  fumarase, class II [KO:K01679] [EC:4.2.1.2]
Fleli_1366  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Fleli_3616  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Fleli_0046  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Fleli_1620  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Fleli_0138  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Fleli_0115  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fli00010  Glycolysis / Gluconeogenesis
fli00053  Ascorbate and aldarate metabolism
fli00061  Fatty acid biosynthesis
fli00071  Fatty acid degradation
fli00190  Oxidative phosphorylation
fli00220  Arginine biosynthesis
fli00250  Alanine, aspartate and glutamate metabolism
fli00280  Valine, leucine and isoleucine degradation
fli00350  Tyrosine metabolism
fli00470  D-Amino acid metabolism
fli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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