KEGG   PATHWAY: gfl00020
Entry
gfl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Christiangramia flava
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gfl00020  Citrate cycle (TCA cycle)
gfl00020

Module
gfl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gfl00020]
gfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gfl00020]
gfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gfl00020]
gfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gfl00020]
gfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gfl00020]
Other DBs
GO: 0006099
Organism
Christiangramia flava [GN:gfl]
Gene
GRFL_0766  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
GRFL_0487  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GRFL_3280  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GRFL_0453  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
GRFL_1173  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GRFL_2560  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GRFL_1172  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GRFL_3427  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
GRFL_3601  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
GRFL_0226  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
GRFL_3497  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
GRFL_2612  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
GRFL_1235  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GRFL_1236  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
GRFL_1234  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
GRFL_3540  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GRFL_0715  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GRFL_2460  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GRFL_1876  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
GRFL_0839  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
GRFL_2080  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
GRFL_0838  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gfl00010  Glycolysis / Gluconeogenesis
gfl00053  Ascorbate and aldarate metabolism
gfl00061  Fatty acid biosynthesis
gfl00071  Fatty acid degradation
gfl00190  Oxidative phosphorylation
gfl00220  Arginine biosynthesis
gfl00250  Alanine, aspartate and glutamate metabolism
gfl00280  Valine, leucine and isoleucine degradation
gfl00350  Tyrosine metabolism
gfl00470  D-Amino acid metabolism
gfl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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