KEGG   PATHWAY: ghi00020
Entry
ghi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gossypium hirsutum (upland cotton)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ghi00020  Citrate cycle (TCA cycle)
ghi00020

Module
ghi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ghi00020]
ghi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ghi00020]
ghi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ghi00020]
ghi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ghi00020]
ghi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ghi00020]
Other DBs
GO: 0006099
Organism
Gossypium hirsutum (upland cotton) [GN:ghi]
Gene
107924402  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
107913953  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107911708  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
107905799  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107933391  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107916207  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
107936128  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
107898661  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
107886475  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
107929070  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
107927299  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107896593  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
107936129  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
121224166  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
107946231  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
121203607  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107887413  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
107909488  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
107943236  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
107903915  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107957204  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107945794  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
107932767  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107916478  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
107946337  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107937864  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
121211304  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
107885926  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107914238  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
107893548  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107920416  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
107892269  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
107897570  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107912878  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107888667  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
107895258  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107921203  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107898537  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107943579  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
107945781  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107891139  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
107945101  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107924423  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107959878  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107959879  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107926029  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107926030  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107897815  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107926318  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
107962000  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X2 [KO:K00658] [EC:2.3.1.61]
107900586  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
107920296  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
107903458  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107932777  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107892112  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
107888950  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
107943359  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107951589  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
107926533  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107910553  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
107886890  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107909029  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107894049  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107920651  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107954628  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107954629  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107952883  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107952885  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107926744  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107942584  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
107909390  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
107920039  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107898491  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107957094  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107941868  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107926496  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107926498  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107934384  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107897134  succinate dehydrogenase subunit 3-1, mitochondrial [KO:K00236]
107914817  succinate dehydrogenase subunit 3-1, mitochondrial [KO:K00236]
24679528  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
24679543  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
107953056  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
107953588  fumarate hydratase 1, mitochondrial-like isoform X3 [KO:K01679] [EC:4.2.1.2]
107919071  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107954261  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
107936241  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107890568  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107938660  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107940531  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107897068  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107947482  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
121220994  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
107950511  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107926717  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107917747  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107912129  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107948725  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107935268  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
107922020  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107925450  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107903665  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107953505  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107886143  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107917950  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
107949820  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
121202959  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107950503  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
107933840  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X1 [KO:K01610] [EC:4.1.1.49]
107935259  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
107913366  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
107945321  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
107912283  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107903690  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107886319  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
107909608  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
107899920  uncharacterized protein LOC107899920 isoform X1 [KO:K00161] [EC:1.2.4.1]
107945879  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107923382  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107947825  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107924236  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107886628  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107886698  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
107939441  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
107960263  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107909532  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
107938475  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
107946197  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [KO:K00162] [EC:1.2.4.1]
107933123  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
107913605  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107901882  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107961821  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107905888  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107906083  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
107915775  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107932387  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107960303  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107958408  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
107959530  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
107896312  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107914045  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107919820  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121230836  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ghi00010  Glycolysis / Gluconeogenesis
ghi00053  Ascorbate and aldarate metabolism
ghi00061  Fatty acid biosynthesis
ghi00062  Fatty acid elongation
ghi00071  Fatty acid degradation
ghi00190  Oxidative phosphorylation
ghi00220  Arginine biosynthesis
ghi00250  Alanine, aspartate and glutamate metabolism
ghi00280  Valine, leucine and isoleucine degradation
ghi00350  Tyrosine metabolism
ghi00470  D-Amino acid metabolism
ghi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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