KEGG   PATHWAY: gtk00020
Entry
gtk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus thermoleovorans KCTC 3570
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gtk00020  Citrate cycle (TCA cycle)
gtk00020

Module
gtk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gtk00020]
gtk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gtk00020]
gtk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gtk00020]
gtk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gtk00020]
gtk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gtk00020]
Other DBs
GO: 0006099
Organism
Geobacillus thermoleovorans KCTC 3570 [GN:gtk]
Gene
GT3570_13415  citrate synthase [KO:K01647] [EC:2.3.3.1]
GT3570_06410  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GT3570_13410  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GT3570_04820  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
GT3570_04825  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GT3570_05005  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GT3570_11290  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GT3570_06155  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GT3570_06160  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GT3570_05690  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GT3570_05685  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GT3570_13095  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
GT3570_13090  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GT3570_13100  succinate dehydrogenase [KO:K00241]
GT3570_02105  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GT3570_01345  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GT3570_13405  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GT3570_06660  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GT3570_05090  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GT3570_13940  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GT3570_04990  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GT3570_15780  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GT3570_04995  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
GT3570_15775  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
GT3570_15785  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
GT3570_03430  dihydrolipoyllysine acetyltransferase [KO:K00627] [EC:2.3.1.12]
GT3570_05000  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gtk00010  Glycolysis / Gluconeogenesis
gtk00053  Ascorbate and aldarate metabolism
gtk00061  Fatty acid biosynthesis
gtk00071  Fatty acid degradation
gtk00190  Oxidative phosphorylation
gtk00220  Arginine biosynthesis
gtk00250  Alanine, aspartate and glutamate metabolism
gtk00280  Valine, leucine and isoleucine degradation
gtk00350  Tyrosine metabolism
gtk00470  D-Amino acid metabolism
gtk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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