KEGG   PATHWAY: gym01100
Entry
gym01100                    Pathway                                
Name
Metabolic pathways - Paenibacillus sp. Y412MC10
Class
Pathway map
gym01100  Metabolic pathways
gym01100

Module
gym_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gym01100]
gym_M00002  Glycolysis, core module involving three-carbon compounds [PATH:gym01100]
gym_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gym01100]
gym_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gym01100]
gym_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gym01100]
gym_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gym01100]
gym_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gym01100]
gym_M00015  Proline biosynthesis, glutamate => proline [PATH:gym01100]
gym_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:gym01100]
gym_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:gym01100]
gym_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gym01100]
gym_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:gym01100]
gym_M00021  Cysteine biosynthesis, serine => cysteine [PATH:gym01100]
gym_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:gym01100]
gym_M00026  Histidine biosynthesis, PRPP => histidine [PATH:gym01100]
gym_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:gym01100]
gym_M00033  Ectoine biosynthesis, aspartate => ectoine [PATH:gym01100]
gym_M00034  Methionine salvage pathway [PATH:gym01100]
gym_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gym01100]
gym_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gym01100]
gym_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gym01100]
gym_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gym01100]
gym_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gym01100]
gym_M00082  Fatty acid biosynthesis, initiation [PATH:gym01100]
gym_M00083  Fatty acid biosynthesis, elongation [PATH:gym01100]
gym_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:gym01100]
gym_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:gym01100]
gym_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:gym01100]
gym_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gym01100]
gym_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:gym01100]
gym_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:gym01100]
gym_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:gym01100]
gym_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:gym01100]
gym_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:gym01100]
gym_M00135  GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:gym01100]
gym_M00151  Cytochrome bc1 complex respiratory unit [PATH:gym01100]
gym_M00155  Cytochrome c oxidase, prokaryotes [PATH:gym01100]
gym_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:gym01100]
gym_M00168  CAM (Crassulacean acid metabolism), dark [PATH:gym01100]
gym_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gym01100]
gym_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:gym01100]
gym_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:gym01100]
gym_M00416  Cytochrome aa3-600 menaquinol oxidase [PATH:gym01100]
gym_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gym01100]
gym_M00526  Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:gym01100]
gym_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:gym01100]
gym_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:gym01100]
gym_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:gym01100]
gym_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:gym01100]
gym_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gym01100]
gym_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:gym01100]
gym_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:gym01100]
gym_M00621  Glycine cleavage system [PATH:gym01100]
gym_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:gym01100]
gym_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:gym01100]
gym_M00793  dTDP-L-rhamnose biosynthesis [PATH:gym01100]
gym_M00844  Arginine biosynthesis, ornithine => arginine [PATH:gym01100]
gym_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:gym01100]
gym_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:gym01100]
gym_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gym01100]
gym_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:gym01100]
gym_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:gym01100]
gym_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:gym01100]
gym_M00926  Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:gym01100]
gym_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gym01100]
gym_M00949  Staphylopine biosynthesis, L-histidine => staphylopine [PATH:gym01100]
gym_M00970  Proline degradation, proline => glutamate [PATH:gym01100]
gym_M00972  Proline metabolism [PATH:gym01100]
Organism
Paenibacillus sp. Y412MC10 [GN:gym]
Related
pathway
gym00010  Glycolysis / Gluconeogenesis
gym00020  Citrate cycle (TCA cycle)
gym00030  Pentose phosphate pathway
gym00040  Pentose and glucuronate interconversions
gym00051  Fructose and mannose metabolism
gym00052  Galactose metabolism
gym00053  Ascorbate and aldarate metabolism
gym00061  Fatty acid biosynthesis
gym00071  Fatty acid degradation
gym00100  Steroid biosynthesis
gym00130  Ubiquinone and other terpenoid-quinone biosynthesis
gym00190  Oxidative phosphorylation
gym00220  Arginine biosynthesis
gym00230  Purine metabolism
gym00240  Pyrimidine metabolism
gym00250  Alanine, aspartate and glutamate metabolism
gym00260  Glycine, serine and threonine metabolism
gym00261  Monobactam biosynthesis
gym00270  Cysteine and methionine metabolism
gym00280  Valine, leucine and isoleucine degradation
gym00290  Valine, leucine and isoleucine biosynthesis
gym00300  Lysine biosynthesis
gym00310  Lysine degradation
gym00330  Arginine and proline metabolism
gym00332  Carbapenem biosynthesis
gym00340  Histidine metabolism
gym00350  Tyrosine metabolism
gym00360  Phenylalanine metabolism
gym00361  Chlorocyclohexane and chlorobenzene degradation
gym00362  Benzoate degradation
gym00380  Tryptophan metabolism
gym00400  Phenylalanine, tyrosine and tryptophan biosynthesis
gym00401  Novobiocin biosynthesis
gym00410  beta-Alanine metabolism
gym00430  Taurine and hypotaurine metabolism
gym00440  Phosphonate and phosphinate metabolism
gym00450  Selenocompound metabolism
gym00460  Cyanoamino acid metabolism
gym00470  D-Amino acid metabolism
gym00480  Glutathione metabolism
gym00500  Starch and sucrose metabolism
gym00511  Other glycan degradation
gym00520  Amino sugar and nucleotide sugar metabolism
gym00521  Streptomycin biosynthesis
gym00523  Polyketide sugar unit biosynthesis
gym00525  Acarbose and validamycin biosynthesis
gym00541  O-Antigen nucleotide sugar biosynthesis
gym00542  O-Antigen repeat unit biosynthesis
gym00543  Exopolysaccharide biosynthesis
gym00550  Peptidoglycan biosynthesis
gym00552  Teichoic acid biosynthesis
gym00561  Glycerolipid metabolism
gym00562  Inositol phosphate metabolism
gym00564  Glycerophospholipid metabolism
gym00565  Ether lipid metabolism
gym00592  alpha-Linolenic acid metabolism
gym00600  Sphingolipid metabolism
gym00620  Pyruvate metabolism
gym00621  Dioxin degradation
gym00622  Xylene degradation
gym00625  Chloroalkane and chloroalkene degradation
gym00626  Naphthalene degradation
gym00627  Aminobenzoate degradation
gym00630  Glyoxylate and dicarboxylate metabolism
gym00633  Nitrotoluene degradation
gym00640  Propanoate metabolism
gym00643  Styrene degradation
gym00650  Butanoate metabolism
gym00660  C5-Branched dibasic acid metabolism
gym00670  One carbon pool by folate
gym00680  Methane metabolism
gym00710  Carbon fixation by Calvin cycle
gym00720  Other carbon fixation pathways
gym00730  Thiamine metabolism
gym00740  Riboflavin metabolism
gym00750  Vitamin B6 metabolism
gym00760  Nicotinate and nicotinamide metabolism
gym00770  Pantothenate and CoA biosynthesis
gym00780  Biotin metabolism
gym00785  Lipoic acid metabolism
gym00790  Folate biosynthesis
gym00860  Porphyrin metabolism
gym00900  Terpenoid backbone biosynthesis
gym00907  Pinene, camphor and geraniol degradation
gym00909  Sesquiterpenoid and triterpenoid biosynthesis
gym00910  Nitrogen metabolism
gym00920  Sulfur metabolism
gym00946  Degradation of flavonoids
gym00999  Biosynthesis of various plant secondary metabolites
gym01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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