KEGG   PATHWAY: hsc00020
Entry
hsc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acetivibrio saccincola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsc00020  Citrate cycle (TCA cycle)
hsc00020

Module
hsc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsc00020]
hsc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsc00020]
Other DBs
GO: 0006099
Organism
Acetivibrio saccincola [GN:hsc]
Gene
HVS_02470  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
HVS_12360  leuA3; 2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
HVS_12355  hacA; Homoaconitase large subunit [KO:K01681] [EC:4.2.1.3]
HVS_05200  icd1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
HVS_05270  icd2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
HVS_07775  korA1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HVS_07800  korA2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HVS_07780  korB1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HVS_07805  korB2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HVS_07785  porC2; Pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
HVS_07770  nuoI; NADH-quinone oxidoreductase subunit I [KO:K00176] [EC:1.2.7.3]
HVS_12115  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
HVS_12110  fumB; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
HVS_00120  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
HVS_08105  padG; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00169] [EC:1.2.7.1]
HVS_08100  padI; NADH-dependent phenylglyoxylate dehydrogenase subunit beta [KO:K00170] [EC:1.2.7.1]
HVS_00125  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
HVS_00110  porC1; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
HVS_08115  porC3; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
HVS_08110  Ferredoxin-2 [KO:K00171] [EC:1.2.7.1]
HVS_00115  porD1; Pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
HVS_10935  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsc00010  Glycolysis / Gluconeogenesis
hsc00053  Ascorbate and aldarate metabolism
hsc00061  Fatty acid biosynthesis
hsc00071  Fatty acid degradation
hsc00190  Oxidative phosphorylation
hsc00220  Arginine biosynthesis
hsc00250  Alanine, aspartate and glutamate metabolism
hsc00280  Valine, leucine and isoleucine degradation
hsc00350  Tyrosine metabolism
hsc00470  D-Amino acid metabolism
hsc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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