KEGG   PATHWAY: jcu00630
Entry
jcu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Jatropha curcas (Barbados nut)
Class
Metabolism; Carbohydrate metabolism
Pathway map
jcu00630  Glyoxylate and dicarboxylate metabolism
jcu00630

Module
jcu_M00012  Glyoxylate cycle [PATH:jcu00630]
jcu_M00532  Photorespiration [PATH:jcu00630]
jcu_M00621  Glycine cleavage system [PATH:jcu00630]
Other DBs
GO: 0046487 0043648
Organism
Jatropha curcas (Barbados nut) [GN:jcu]
Gene
105645378  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
105630254  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
105643513  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105643512  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105640231  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
105632136  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105643184  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
105635993  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105639910  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
105639192  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105640544  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105644297  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105650329  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105632965  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
105648160  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105647082  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
105636201  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105631362  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
105634006  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
105631361  LOW QUALITY PROTEIN: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
105635226  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
105635227  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
105628554  catalase-2 [KO:K03781] [EC:1.11.1.6]
105643083  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105643081  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105645910  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
110008591  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105631446  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105643580  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105638711  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
105636217  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
105644917  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
7564870  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
119369516  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
119369545  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
119369688  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
119370675  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
105650677  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
105642030  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
105635578  ribulose bisphosphate carboxylase small chain clone 512 isoform X2 [KO:K01602] [EC:4.1.1.39]
105635948  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
105644652  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
105628924  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105631892  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
105645431  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
105646377  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105630748  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
105633344  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
105633138  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
105639938  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
105638171  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
105638864  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
105638150  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
105649314  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
105643517  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
105643594  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
105632726  glycine cleavage system H protein, mitochondrial [KO:K02437]
105648019  glycine cleavage system H protein 2, mitochondrial isoform X1 [KO:K02437]
105634939  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
105641754  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
105632281  formyltetrahydrofolate deformylase 1, mitochondrial isoform X2 [KO:K01433] [EC:3.5.1.10]
105639832  formamidase isoform X2 [KO:K01455] [EC:3.5.1.49]
105648467  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
105645829  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
jcu00010  Glycolysis / Gluconeogenesis
jcu00020  Citrate cycle (TCA cycle)
jcu00030  Pentose phosphate pathway
jcu00053  Ascorbate and aldarate metabolism
jcu00071  Fatty acid degradation
jcu00230  Purine metabolism
jcu00250  Alanine, aspartate and glutamate metabolism
jcu00260  Glycine, serine and threonine metabolism
jcu00620  Pyruvate metabolism
jcu00710  Carbon fixation by Calvin cycle
jcu00750  Vitamin B6 metabolism
jcu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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