KEGG   PATHWAY: kmx00020
Entry
kmx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kluyveromyces marxianus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kmx00020  Citrate cycle (TCA cycle)
kmx00020

Module
kmx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kmx00020]
kmx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kmx00020]
kmx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kmx00020]
kmx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kmx00020]
kmx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kmx00020]
Other DBs
GO: 0006099
Organism
Kluyveromyces marxianus [GN:kmx]
Gene
KLMA_70444  CIT3; citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
KLMA_20105  CIT1; citrate synthase [KO:K01647] [EC:2.3.3.1]
KLMA_30312  ACO2b; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KLMA_40470  IDP1; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
KLMA_30149  IDP2; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
KLMA_80139  IDH1; isocitrate dehydrogenase [NAD] subunit 1 [KO:K00030] [EC:1.1.1.41]
KLMA_20575  IDH2; isocitrate dehydrogenase [NAD] subunit 2 [KO:K00030] [EC:1.1.1.41]
KLMA_60541  KGD1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KLMA_50493  KGD2; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KLMA_60420  LPD1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KLMA_20568  LSC1; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
KLMA_10336  LSC2; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
KLMA_20466  SDH1; succinate dehydrogenase [ubiquinone] flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
KLMA_80408  SDH2; succinate dehydrogenase [ubiquinone] iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
KLMA_30124  succinate dehydrogenase [ubiquinone] cytochrome b subunit [KO:K00236]
KLMA_50550  SDH4; succinate dehydrogenase [ubiquinone] cytochrome b small subunit [KO:K00237]
KLMA_80028  FUM1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KLMA_40055  MDH3; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
KLMA_60167  MDH1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
KLMA_40391  MDH2; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
KLMA_10253  PYC2; pyruvate carboxylase 2 [KO:K01958] [EC:6.4.1.1]
KLMA_30719  PCK1; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
KLMA_20172  PDA1; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KLMA_20278  PDB1; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KLMA_60529  LAT1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kmx00010  Glycolysis / Gluconeogenesis
kmx00053  Ascorbate and aldarate metabolism
kmx00061  Fatty acid biosynthesis
kmx00062  Fatty acid elongation
kmx00071  Fatty acid degradation
kmx00190  Oxidative phosphorylation
kmx00220  Arginine biosynthesis
kmx00250  Alanine, aspartate and glutamate metabolism
kmx00280  Valine, leucine and isoleucine degradation
kmx00350  Tyrosine metabolism
kmx00470  D-Amino acid metabolism
kmx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system