KEGG   PATHWAY: las00020
Entry
las00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Liberibacter asiaticus psy62
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
las00020  Citrate cycle (TCA cycle)
las00020

Module
las_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:las00020]
las_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:las00020]
las_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:las00020]
las_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:las00020]
Other DBs
GO: 0006099
Organism
Candidatus Liberibacter asiaticus psy62 [GN:las]
Gene
CLIBASIA_01200  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CLIBASIA_01680  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CLIBASIA_04005  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CLIBASIA_04765  kgd; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
CLIBASIA_04770  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CLIBASIA_02810  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLIBASIA_04775  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLIBASIA_04760  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CLIBASIA_04755  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CLIBASIA_04725  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CLIBASIA_04730  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CLIBASIA_04715  sdhC; succinate dehydrogenase protein, cytochrome b subunit [KO:K00241]
CLIBASIA_04720  sdhD; succinate dehydrogenase hydrophobic membrane anchor [KO:K00242]
CLIBASIA_00375  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CLIBASIA_04750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CLIBASIA_03595  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CLIBASIA_02795  dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
CLIBASIA_02800  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CLIBASIA_02805  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
las00010  Glycolysis / Gluconeogenesis
las00061  Fatty acid biosynthesis
las00190  Oxidative phosphorylation
las00220  Arginine biosynthesis
las00250  Alanine, aspartate and glutamate metabolism
las00280  Valine, leucine and isoleucine degradation
las00470  D-Amino acid metabolism
las00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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