KEGG   PATHWAY: lmoa00020
Entry
lmoa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria monocytogenes ATCC 19117 (serotype 4d)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmoa00020  Citrate cycle (TCA cycle)
lmoa00020

Module
lmoa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmoa00020]
lmoa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmoa00020]
Other DBs
GO: 0006099
Organism
Listeria monocytogenes ATCC 19117 (serotype 4d) [GN:lmoa]
Gene
LMOATCC19117_1578  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
LMOATCC19117_1653  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LMOATCC19117_1577  citC; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LMOATCC19117_1077  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOATCC19117_1378  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOATCC19117_2288  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
LMOATCC19117_1090  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LMOATCC19117_1074  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
LMOATCC19117_1075  pdhB; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
LMOATCC19117_1076  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LMOATCC19117_0847  pyruvate flavodoxin/ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmoa00010  Glycolysis / Gluconeogenesis
lmoa00061  Fatty acid biosynthesis
lmoa00071  Fatty acid degradation
lmoa00190  Oxidative phosphorylation
lmoa00220  Arginine biosynthesis
lmoa00250  Alanine, aspartate and glutamate metabolism
lmoa00280  Valine, leucine and isoleucine degradation
lmoa00350  Tyrosine metabolism
lmoa00470  D-Amino acid metabolism
lmoa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system