KEGG   PATHWAY: mky00920
Entry
mky00920                    Pathway                                
Name
Sulfur metabolism - Mycobacterium kiyosense
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
mky00920  Sulfur metabolism
mky00920

Module
mky_M00021  Cysteine biosynthesis, serine => cysteine [PATH:mky00920]
mky_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:mky00920]
Other DBs
GO: 0006790
Organism
Mycobacterium kiyosense [GN:mky]
Gene
IWGMT90018_14770  hypothetical protein [KO:K23163]
IWGMT90018_20870  subI; sulfate ABC transporter substrate-binding protein [KO:K23163]
IWGMT90018_14790  cysT_1; sulfate ABC transporter permease subunit CysT [KO:K02046]
IWGMT90018_20880  cysT_2; sulfate ABC transporter permease subunit CysT [KO:K02046]
IWGMT90018_14800  cysW_1; sulfate ABC transporter permease CysW [KO:K02047]
IWGMT90018_20890  cysW_2; sulfate ABC transporter permease CysW [KO:K02047]
IWGMT90018_20900  cysA; sulfate/thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
IWGMT90018_01680  ABC transporter substrate-binding protein [KO:K15553]
IWGMT90018_27370  hypothetical protein [KO:K15553]
IWGMT90018_36040  putative nitrate ABC transporter, periplasmic protein [KO:K15553]
IWGMT90018_01700  ssuC; sulfate ABC transporter permease [KO:K15554]
IWGMT90018_27350  ABC transporter permease [KO:K15554]
IWGMT90018_36030  putative nitrate ABC transporter, permease protein [KO:K15554]
IWGMT90018_01690  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
IWGMT90018_27360  ssuB; aliphatic sulfonates import ATP-binding protein SsuB [KO:K15555] [EC:7.6.2.14]
IWGMT90018_36020  putative nitrate ABC transporter, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
IWGMT90018_27380  hypothetical protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
IWGMT90018_43290  cysNC; bifunctional enzyme CysN/CysC [KO:K00955] [EC:2.7.7.4 2.7.1.25]
IWGMT90018_48830  adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
IWGMT90018_43300  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
IWGMT90018_48820  sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
IWGMT90018_23200  3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
IWGMT90018_26730  cysQ; 3'-phosphoadenosine 5'-phosphate phosphatase [KO:K01082] [EC:3.1.3.7]
IWGMT90018_39320  nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [KO:K06881] [EC:3.1.3.7 3.1.13.3]
IWGMT90018_20920  cysH; putative phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
IWGMT90018_21780  putative oxidoreductase [KO:K00380] [EC:1.8.1.2]
IWGMT90018_20930  sir; sulfite reductase [ferredoxin] [KO:K00392] [EC:1.8.7.1]
IWGMT90018_26370  hypothetical protein [KO:K17218] [EC:1.8.5.4]
IWGMT90018_55500  cysA1; putative thiosulfate sulfurtransferase 1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
IWGMT90018_12910  sseA; putative thiosulfate sulfurtransferase SseA [KO:K01011] [EC:2.8.1.1 2.8.1.2]
IWGMT90018_23370  sseB; putative thiosulfate sulfurtransferase SseB [KO:K01011] [EC:2.8.1.1 2.8.1.2]
IWGMT90018_21590  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
IWGMT90018_51540  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
IWGMT90018_58890  cysteine synthase [KO:K01738] [EC:2.5.1.47]
IWGMT90018_21600  cysK; O-acetylserine sulfhydrylase [KO:K01738] [EC:2.5.1.47]
IWGMT90018_12130  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
IWGMT90018_16690  putative cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
IWGMT90018_50560  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
IWGMT90018_06900  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
IWGMT90018_11320  dimethyl sulfone monooxygenase SfnG [KO:K17228] [EC:1.14.14.35]
IWGMT90018_13550  membrane protein [KO:K21310] [EC:2.1.1.334]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
mky00260  Glycine, serine and threonine metabolism
mky00270  Cysteine and methionine metabolism
mky00680  Methane metabolism
mky00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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