KEGG   PATHWAY: mod00020
Entry
mod00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Myroides odoratimimus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mod00020  Citrate cycle (TCA cycle)
mod00020

Module
mod_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mod00020]
mod_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mod00020]
mod_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mod00020]
mod_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mod00020]
mod_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mod00020]
Other DBs
GO: 0006099
Organism
Myroides odoratimimus [GN:mod]
Gene
AS202_02260  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AS202_11125  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AS202_13595  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AS202_11115  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AS202_01440  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AS202_07940  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AS202_02050  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
AS202_07945  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AS202_09425  hypothetical protein [KO:K00382] [EC:1.8.1.4]
AS202_14465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AS202_14050  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AS202_12900  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AS202_13490  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AS202_16540  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AS202_04540  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AS202_16545  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AS202_04535  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AS202_16535  succinate dehydrogenase [KO:K00241]
AS202_04545  succinate dehydrogenase [KO:K00241]
AS202_04310  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AS202_00575  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AS202_12340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AS202_13275  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AS202_03685  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AS202_02800  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AS202_08770  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AS202_02795  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mod00010  Glycolysis / Gluconeogenesis
mod00053  Ascorbate and aldarate metabolism
mod00061  Fatty acid biosynthesis
mod00071  Fatty acid degradation
mod00190  Oxidative phosphorylation
mod00220  Arginine biosynthesis
mod00250  Alanine, aspartate and glutamate metabolism
mod00280  Valine, leucine and isoleucine degradation
mod00350  Tyrosine metabolism
mod00470  D-Amino acid metabolism
mod00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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