KEGG   PATHWAY: ndi00020
Entry
ndi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Naumovozyma dairenensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ndi00020  Citrate cycle (TCA cycle)
ndi00020

Module
ndi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ndi00020]
ndi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ndi00020]
ndi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ndi00020]
ndi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ndi00020]
ndi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ndi00020]
Other DBs
GO: 0006099
Organism
Naumovozyma dairenensis [GN:ndi]
Gene
NDAI_0G04410  NDAI0G04410; hypothetical protein [KO:K01647] [EC:2.3.3.1]
NDAI_0B02160  NDAI0B02160; hypothetical protein [KO:K01647] [EC:2.3.3.1]
NDAI_0D02890  NDAI0D02890; hypothetical protein [KO:K01681] [EC:4.2.1.3]
NDAI_0G00850  NDAI0G00850; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NDAI_0D04360  NDAI0D04360; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NDAI_0G05160  NDAI0G05160; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NDAI_0B03590  NDAI0B03590; hypothetical protein [KO:K00030] [EC:1.1.1.41]
NDAI_0C01410  NDAI0C01410; hypothetical protein [KO:K00030] [EC:1.1.1.41]
NDAI_0B03810  NDAI0B03810; hypothetical protein [KO:K00164] [EC:1.2.4.2]
NDAI_0J00970  NDAI0J00970; hypothetical protein [KO:K00658] [EC:2.3.1.61]
NDAI_0C06400  NDAI0C06400; hypothetical protein [KO:K00382] [EC:1.8.1.4]
NDAI_0C01360  NDAI0C01360; hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NDAI_0B00990  NDAI0B00990; hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NDAI_0C03810  NDAI0C03810; hypothetical protein [KO:K00234] [EC:1.3.5.1]
NDAI_0H00250  NDAI0H00250; hypothetical protein [KO:K00235] [EC:1.3.5.1]
NDAI_0D04950  NDAI0D04950; hypothetical protein [KO:K00235] [EC:1.3.5.1]
NDAI_0E01940  NDAI0E01940; hypothetical protein [KO:K00236]
NDAI_0A01150  NDAI0A01150; hypothetical protein [KO:K00237]
NDAI_0I02470  NDAI0I02470; hypothetical protein [KO:K01679] [EC:4.2.1.2]
NDAI_0G03940  NDAI0G03940; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0E01670  NDAI0E01670; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0C00340  NDAI0C00340; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0I01710  NDAI0I01710; hypothetical protein [KO:K01958] [EC:6.4.1.1]
NDAI_0F01780  NDAI0F01780; hypothetical protein [KO:K01958] [EC:6.4.1.1]
NDAI_0E05080  NDAI0E05080; hypothetical protein [KO:K01610] [EC:4.1.1.49]
NDAI_0B02340  NDAI0B02340; hypothetical protein [KO:K00161] [EC:1.2.4.1]
NDAI_0F01830  NDAI0F01830; hypothetical protein [KO:K00162] [EC:1.2.4.1]
NDAI_0F02400  NDAI0F02400; hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ndi00010  Glycolysis / Gluconeogenesis
ndi00053  Ascorbate and aldarate metabolism
ndi00061  Fatty acid biosynthesis
ndi00062  Fatty acid elongation
ndi00071  Fatty acid degradation
ndi00190  Oxidative phosphorylation
ndi00220  Arginine biosynthesis
ndi00250  Alanine, aspartate and glutamate metabolism
ndi00280  Valine, leucine and isoleucine degradation
ndi00350  Tyrosine metabolism
ndi00470  D-Amino acid metabolism
ndi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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