KEGG   PATHWAY: pde01100
Entry
pde01100                    Pathway                                
Name
Metabolic pathways - Paracoccus denitrificans
Class
Pathway map
pde01100  Metabolic pathways
pde01100

Module
pde_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pde01100]
pde_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pde01100]
pde_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pde01100]
pde_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pde01100]
pde_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pde01100]
pde_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pde01100]
pde_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pde01100]
pde_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pde01100]
pde_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pde01100]
pde_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pde01100]
pde_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pde01100]
pde_M00012  Glyoxylate cycle [PATH:pde01100]
pde_M00015  Proline biosynthesis, glutamate => proline [PATH:pde01100]
pde_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pde01100]
pde_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pde01100]
pde_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pde01100]
pde_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pde01100]
pde_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pde01100]
pde_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pde01100]
pde_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pde01100]
pde_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pde01100]
pde_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pde01100]
pde_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pde01100]
pde_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pde01100]
pde_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pde01100]
pde_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pde01100]
pde_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pde01100]
pde_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pde01100]
pde_M00082  Fatty acid biosynthesis, initiation [PATH:pde01100]
pde_M00083  Fatty acid biosynthesis, elongation [PATH:pde01100]
pde_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pde01100]
pde_M00087  beta-Oxidation [PATH:pde01100]
pde_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:pde01100]
pde_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pde01100]
pde_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pde01100]
pde_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pde01100]
pde_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pde01100]
pde_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pde01100]
pde_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pde01100]
pde_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:pde01100]
pde_M00140  C1-unit interconversion, prokaryotes [PATH:pde01100]
pde_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pde01100]
pde_M00149  Succinate dehydrogenase, prokaryotes [PATH:pde01100]
pde_M00151  Cytochrome bc1 complex respiratory unit [PATH:pde01100]
pde_M00155  Cytochrome c oxidase, prokaryotes [PATH:pde01100]
pde_M00156  Cytochrome c oxidase, cbb3-type [PATH:pde01100]
pde_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pde01100]
pde_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:pde01100]
pde_M00169  CAM (Crassulacean acid metabolism), light [PATH:pde01100]
pde_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pde01100]
pde_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pde01100]
pde_M00373  Ethylmalonyl pathway [PATH:pde01100]
pde_M00417  Cytochrome o ubiquinol oxidase [PATH:pde01100]
pde_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pde01100]
pde_M00529  Denitrification, nitrate => nitrogen [PATH:pde01100]
pde_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pde01100]
pde_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pde01100]
pde_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pde01100]
pde_M00555  Betaine biosynthesis, choline => betaine [PATH:pde01100]
pde_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pde01100]
pde_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pde01100]
pde_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pde01100]
pde_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pde01100]
pde_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:pde01100]
pde_M00621  Glycine cleavage system [PATH:pde01100]
pde_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pde01100]
pde_M00793  dTDP-L-rhamnose biosynthesis [PATH:pde01100]
pde_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pde01100]
pde_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pde01100]
pde_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pde01100]
pde_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pde01100]
pde_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pde01100]
pde_M00919  Ectoine degradation, ectoine => aspartate [PATH:pde01100]
pde_M00925  Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:pde01100]
pde_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pde01100]
pde_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pde01100]
pde_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pde01100]
pde_M00970  Proline degradation, proline => glutamate [PATH:pde01100]
pde_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:pde01100]
Organism
Paracoccus denitrificans [GN:pde]
Related
pathway
pde00010  Glycolysis / Gluconeogenesis
pde00020  Citrate cycle (TCA cycle)
pde00030  Pentose phosphate pathway
pde00040  Pentose and glucuronate interconversions
pde00051  Fructose and mannose metabolism
pde00052  Galactose metabolism
pde00053  Ascorbate and aldarate metabolism
pde00061  Fatty acid biosynthesis
pde00071  Fatty acid degradation
pde00121  Secondary bile acid biosynthesis
pde00130  Ubiquinone and other terpenoid-quinone biosynthesis
pde00190  Oxidative phosphorylation
pde00220  Arginine biosynthesis
pde00230  Purine metabolism
pde00240  Pyrimidine metabolism
pde00250  Alanine, aspartate and glutamate metabolism
pde00260  Glycine, serine and threonine metabolism
pde00261  Monobactam biosynthesis
pde00270  Cysteine and methionine metabolism
pde00280  Valine, leucine and isoleucine degradation
pde00290  Valine, leucine and isoleucine biosynthesis
pde00300  Lysine biosynthesis
pde00310  Lysine degradation
pde00330  Arginine and proline metabolism
pde00332  Carbapenem biosynthesis
pde00340  Histidine metabolism
pde00350  Tyrosine metabolism
pde00360  Phenylalanine metabolism
pde00361  Chlorocyclohexane and chlorobenzene degradation
pde00362  Benzoate degradation
pde00364  Fluorobenzoate degradation
pde00380  Tryptophan metabolism
pde00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pde00401  Novobiocin biosynthesis
pde00410  beta-Alanine metabolism
pde00430  Taurine and hypotaurine metabolism
pde00440  Phosphonate and phosphinate metabolism
pde00450  Selenocompound metabolism
pde00460  Cyanoamino acid metabolism
pde00470  D-Amino acid metabolism
pde00480  Glutathione metabolism
pde00500  Starch and sucrose metabolism
pde00520  Amino sugar and nucleotide sugar metabolism
pde00521  Streptomycin biosynthesis
pde00523  Polyketide sugar unit biosynthesis
pde00525  Acarbose and validamycin biosynthesis
pde00540  Lipopolysaccharide biosynthesis
pde00541  O-Antigen nucleotide sugar biosynthesis
pde00543  Exopolysaccharide biosynthesis
pde00550  Peptidoglycan biosynthesis
pde00552  Teichoic acid biosynthesis
pde00561  Glycerolipid metabolism
pde00562  Inositol phosphate metabolism
pde00564  Glycerophospholipid metabolism
pde00592  alpha-Linolenic acid metabolism
pde00620  Pyruvate metabolism
pde00622  Xylene degradation
pde00623  Toluene degradation
pde00625  Chloroalkane and chloroalkene degradation
pde00626  Naphthalene degradation
pde00627  Aminobenzoate degradation
pde00630  Glyoxylate and dicarboxylate metabolism
pde00640  Propanoate metabolism
pde00643  Styrene degradation
pde00650  Butanoate metabolism
pde00660  C5-Branched dibasic acid metabolism
pde00670  One carbon pool by folate
pde00680  Methane metabolism
pde00710  Carbon fixation in photosynthetic organisms
pde00730  Thiamine metabolism
pde00740  Riboflavin metabolism
pde00750  Vitamin B6 metabolism
pde00760  Nicotinate and nicotinamide metabolism
pde00770  Pantothenate and CoA biosynthesis
pde00780  Biotin metabolism
pde00785  Lipoic acid metabolism
pde00790  Folate biosynthesis
pde00860  Porphyrin metabolism
pde00900  Terpenoid backbone biosynthesis
pde00907  Pinene, camphor and geraniol degradation
pde00910  Nitrogen metabolism
pde00920  Sulfur metabolism
pde00930  Caprolactam degradation
pde00999  Biosynthesis of various plant secondary metabolites
pde01053  Biosynthesis of siderophore group nonribosomal peptides
pde01055  Biosynthesis of vancomycin group antibiotics
KO pathway
ko01100   
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