KEGG   PATHWAY: plai00020
Entry
plai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Poecilia latipinna (sailfin molly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plai00020  Citrate cycle (TCA cycle)
plai00020

Module
plai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:plai00020]
plai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plai00020]
plai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plai00020]
plai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plai00020]
plai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plai00020]
Other DBs
GO: 0006099
Organism
Poecilia latipinna (sailfin molly) [GN:plai]
Gene
106936182  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
106949824  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
106950771  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
106941332  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
106961587  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
106935930  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
106957299  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
106953397  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
106953783  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
106949172  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106956557  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106935736  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
106938657  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106953380  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
106948124  ogdh; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
106941829  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
106957672  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
106961302  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
106949929  suclg1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106957145  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106940792  sucla2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106964248  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
106947826  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
106960349  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
106962319  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
106935004  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
106955280  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
106955506  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106937062  mdh1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
106939839  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106954387  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
106957076  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
106963429  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
106934742  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
106952394  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
106954480  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
106956149  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plai00010  Glycolysis / Gluconeogenesis
plai00053  Ascorbate and aldarate metabolism
plai00061  Fatty acid biosynthesis
plai00062  Fatty acid elongation
plai00071  Fatty acid degradation
plai00190  Oxidative phosphorylation
plai00220  Arginine biosynthesis
plai00250  Alanine, aspartate and glutamate metabolism
plai00280  Valine, leucine and isoleucine degradation
plai00350  Tyrosine metabolism
plai00470  D-Amino acid metabolism
plai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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