KEGG   PATHWAY: plw00020
Entry
plw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus lautus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plw00020  Citrate cycle (TCA cycle)
plw00020

Module
plw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plw00020]
plw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plw00020]
plw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plw00020]
plw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plw00020]
Other DBs
GO: 0006099
Organism
Paenibacillus lautus [GN:plw]
Gene
D5F53_05270  citrate synthase [KO:K01647] [EC:2.3.3.1]
D5F53_25270  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
D5F53_05275  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D5F53_10170  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D5F53_10175  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D5F53_17620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5F53_19025  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5F53_33060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5F53_09250  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D5F53_09245  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D5F53_02880  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D5F53_02885  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D5F53_02875  succinate dehydrogenase [KO:K00241]
D5F53_05300  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
D5F53_31705  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D5F53_05280  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D5F53_15765  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
D5F53_17635  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D5F53_17630  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
D5F53_17625  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
D5F53_24495  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
D5F53_24500  4Fe-4S dicluster domain-containing protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plw00010  Glycolysis / Gluconeogenesis
plw00053  Ascorbate and aldarate metabolism
plw00061  Fatty acid biosynthesis
plw00071  Fatty acid degradation
plw00190  Oxidative phosphorylation
plw00220  Arginine biosynthesis
plw00250  Alanine, aspartate and glutamate metabolism
plw00280  Valine, leucine and isoleucine degradation
plw00350  Tyrosine metabolism
plw00470  D-Amino acid metabolism
plw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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