KEGG   PATHWAY: pnk00240
Entry
pnk00240                    Pathway                                
Name
Pyrimidine metabolism - Paenibacillus nuruki
Class
Metabolism; Nucleotide metabolism
Pathway map
pnk00240  Pyrimidine metabolism
pnk00240

Module
pnk_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pnk00240]
pnk_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pnk00240]
pnk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pnk00240]
pnk_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pnk00240]
Other DBs
GO: 0006220 0006213
Organism
Paenibacillus nuruki [GN:pnk]
Gene
AASFL403_01830  [KO:K06287] [EC:3.6.1.-]
AASFL403_02580  [KO:K01489] [EC:3.5.4.5]
AASFL403_02600  pdp; pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
AASFL403_03330  [KO:K01493] [EC:3.5.4.12]
AASFL403_03485  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
AASFL403_03755  pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR [KO:K02825] [EC:2.4.2.9]
AASFL403_03760  [KO:K00609] [EC:2.1.3.2]
AASFL403_03765  [KO:K01465] [EC:3.5.2.3]
AASFL403_03770  [KO:K01956] [EC:6.3.5.5]
AASFL403_03775  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
AASFL403_03780  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
AASFL403_03785  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
AASFL403_04895  cmk; (d)CMP kinase [KO:K00945] [EC:2.7.4.25]
AASFL403_04975  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AASFL403_06260  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
AASFL403_09800  [KO:K09769] [EC:3.1.4.16]
AASFL403_09890  dut; dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
AASFL403_09995  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
AASFL403_10750  [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AASFL403_10990  [KO:K00254] [EC:1.3.5.2]
AASFL403_13250  [KO:K09913] [EC:2.4.2.1 2.4.2.2]
AASFL403_13740  [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AASFL403_14260  [KO:K00757] [EC:2.4.2.3]
AASFL403_14820  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
AASFL403_14825  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
AASFL403_15165  [KO:K15519] [EC:2.7.1.76 2.7.1.74]
AASFL403_15670  [KO:K00560] [EC:2.1.1.45]
AASFL403_16035  [KO:K17722] [EC:1.3.1.1]
AASFL403_16040  preA; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [KO:K17723] [EC:1.3.1.1]
AASFL403_16045  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
AASFL403_16940  [KO:K21636] [EC:1.1.98.6]
AASFL403_17175  [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AASFL403_17260  [KO:K00857] [EC:2.7.1.21]
AASFL403_18030  [KO:K06016] [EC:3.5.1.6 3.5.1.87]
AASFL403_18035  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
AASFL403_18445  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
AASFL403_18845  tmk; dTMP kinase [KO:K00943] [EC:2.7.4.9]
AASFL403_19715  [KO:K02823]
AASFL403_19720  [KO:K17828] [EC:1.3.1.14]
AASFL403_21630  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
pnk00030  Pentose phosphate pathway
pnk00220  Arginine biosynthesis
pnk00250  Alanine, aspartate and glutamate metabolism
pnk00280  Valine, leucine and isoleucine degradation
pnk00410  beta-Alanine metabolism
KO pathway
ko00240   

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