KEGG   PATHWAY: pop01100
Entry
pop01100                    Pathway                                
Name
Metabolic pathways - Populus trichocarpa (black cottonwood)
Class
Pathway map
pop01100  Metabolic pathways
pop01100

Module
pop_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pop01100]
pop_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pop01100]
pop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pop01100]
pop_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pop01100]
pop_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pop01100]
pop_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pop01100]
pop_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pop01100]
pop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pop01100]
pop_M00012  Glyoxylate cycle [PATH:pop01100]
pop_M00015  Proline biosynthesis, glutamate => proline [PATH:pop01100]
pop_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pop01100]
pop_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pop01100]
pop_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pop01100]
pop_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pop01100]
pop_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pop01100]
pop_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pop01100]
pop_M00026  Histidine biosynthesis, PRPP => histidine [PATH:pop01100]
pop_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:pop01100]
pop_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pop01100]
pop_M00034  Methionine salvage pathway [PATH:pop01100]
pop_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pop01100]
pop_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:pop01100]
pop_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pop01100]
pop_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:pop01100]
pop_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pop01100]
pop_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pop01100]
pop_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pop01100]
pop_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pop01100]
pop_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pop01100]
pop_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pop01100]
pop_M00055  N-glycan precursor biosynthesis [PATH:pop01100]
pop_M00073  N-glycan precursor trimming [PATH:pop01100]
pop_M00081  Pectin degradation [PATH:pop01100]
pop_M00082  Fatty acid biosynthesis, initiation [PATH:pop01100]
pop_M00083  Fatty acid biosynthesis, elongation [PATH:pop01100]
pop_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pop01100]
pop_M00087  beta-Oxidation [PATH:pop01100]
pop_M00089  Triacylglycerol biosynthesis [PATH:pop01100]
pop_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:pop01100]
pop_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pop01100]
pop_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pop01100]
pop_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:pop01100]
pop_M00098  Acylglycerol degradation [PATH:pop01100]
pop_M00100  Sphingosine degradation [PATH:pop01100]
pop_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:pop01100]
pop_M00113  Jasmonic acid biosynthesis [PATH:pop01100]
pop_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:pop01100]
pop_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pop01100]
pop_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pop01100]
pop_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pop01100]
pop_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pop01100]
pop_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pop01100]
pop_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:pop01100]
pop_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:pop01100]
pop_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:pop01100]
pop_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:pop01100]
pop_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:pop01100]
pop_M00145  NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH:pop01100]
pop_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pop01100]
pop_M00161  Photosystem II [PATH:pop01100]
pop_M00163  Photosystem I [PATH:pop01100]
pop_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:pop01100]
pop_M00168  CAM (Crassulacean acid metabolism), dark [PATH:pop01100]
pop_M00169  CAM (Crassulacean acid metabolism), light [PATH:pop01100]
pop_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:pop01100]
pop_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:pop01100]
pop_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:pop01100]
pop_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pop01100]
pop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pop01100]
pop_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:pop01100]
pop_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:pop01100]
pop_M00371  Castasterone biosynthesis, campesterol => castasterone [PATH:pop01100]
pop_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:pop01100]
pop_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:pop01100]
pop_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pop01100]
pop_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:pop01100]
pop_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pop01100]
pop_M00532  Photorespiration [PATH:pop01100]
pop_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pop01100]
pop_M00555  Betaine biosynthesis, choline => betaine [PATH:pop01100]
pop_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pop01100]
pop_M00621  Glycine cleavage system [PATH:pop01100]
pop_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pop01100]
pop_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pop01100]
pop_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pop01100]
pop_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pop01100]
pop_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pop01100]
pop_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:pop01100]
pop_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:pop01100]
pop_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:pop01100]
pop_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:pop01100]
pop_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pop01100]
pop_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:pop01100]
pop_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:pop01100]
pop_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:pop01100]
pop_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:pop01100]
pop_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:pop01100]
pop_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pop01100]
pop_M00970  Proline degradation, proline => glutamate [PATH:pop01100]
pop_M00972  Proline metabolism [PATH:pop01100]
Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Related
pathway
pop00010  Glycolysis / Gluconeogenesis
pop00020  Citrate cycle (TCA cycle)
pop00030  Pentose phosphate pathway
pop00040  Pentose and glucuronate interconversions
pop00051  Fructose and mannose metabolism
pop00052  Galactose metabolism
pop00053  Ascorbate and aldarate metabolism
pop00061  Fatty acid biosynthesis
pop00062  Fatty acid elongation
pop00071  Fatty acid degradation
pop00073  Cutin, suberine and wax biosynthesis
pop00100  Steroid biosynthesis
pop00130  Ubiquinone and other terpenoid-quinone biosynthesis
pop00190  Oxidative phosphorylation
pop00195  Photosynthesis
pop00196  Photosynthesis - antenna proteins
pop00220  Arginine biosynthesis
pop00230  Purine metabolism
pop00232  Caffeine metabolism
pop00240  Pyrimidine metabolism
pop00250  Alanine, aspartate and glutamate metabolism
pop00260  Glycine, serine and threonine metabolism
pop00261  Monobactam biosynthesis
pop00270  Cysteine and methionine metabolism
pop00280  Valine, leucine and isoleucine degradation
pop00290  Valine, leucine and isoleucine biosynthesis
pop00300  Lysine biosynthesis
pop00310  Lysine degradation
pop00330  Arginine and proline metabolism
pop00340  Histidine metabolism
pop00350  Tyrosine metabolism
pop00360  Phenylalanine metabolism
pop00380  Tryptophan metabolism
pop00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pop00410  beta-Alanine metabolism
pop00430  Taurine and hypotaurine metabolism
pop00440  Phosphonate and phosphinate metabolism
pop00450  Selenocompound metabolism
pop00460  Cyanoamino acid metabolism
pop00470  D-Amino acid metabolism
pop00480  Glutathione metabolism
pop00500  Starch and sucrose metabolism
pop00510  N-Glycan biosynthesis
pop00511  Other glycan degradation
pop00513  Various types of N-glycan biosynthesis
pop00514  Other types of O-glycan biosynthesis
pop00520  Amino sugar and nucleotide sugar metabolism
pop00531  Glycosaminoglycan degradation
pop00543  Exopolysaccharide biosynthesis
pop00561  Glycerolipid metabolism
pop00562  Inositol phosphate metabolism
pop00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
pop00564  Glycerophospholipid metabolism
pop00565  Ether lipid metabolism
pop00590  Arachidonic acid metabolism
pop00591  Linoleic acid metabolism
pop00592  alpha-Linolenic acid metabolism
pop00600  Sphingolipid metabolism
pop00601  Glycosphingolipid biosynthesis - lacto and neolacto series
pop00603  Glycosphingolipid biosynthesis - globo and isoglobo series
pop00604  Glycosphingolipid biosynthesis - ganglio series
pop00620  Pyruvate metabolism
pop00630  Glyoxylate and dicarboxylate metabolism
pop00640  Propanoate metabolism
pop00650  Butanoate metabolism
pop00660  C5-Branched dibasic acid metabolism
pop00670  One carbon pool by folate
pop00710  Carbon fixation by Calvin cycle
pop00730  Thiamine metabolism
pop00740  Riboflavin metabolism
pop00750  Vitamin B6 metabolism
pop00760  Nicotinate and nicotinamide metabolism
pop00770  Pantothenate and CoA biosynthesis
pop00780  Biotin metabolism
pop00785  Lipoic acid metabolism
pop00790  Folate biosynthesis
pop00860  Porphyrin metabolism
pop00900  Terpenoid backbone biosynthesis
pop00902  Monoterpenoid biosynthesis
pop00904  Diterpenoid biosynthesis
pop00905  Brassinosteroid biosynthesis
pop00906  Carotenoid biosynthesis
pop00908  Zeatin biosynthesis
pop00909  Sesquiterpenoid and triterpenoid biosynthesis
pop00910  Nitrogen metabolism
pop00920  Sulfur metabolism
pop00940  Phenylpropanoid biosynthesis
pop00941  Flavonoid biosynthesis
pop00942  Anthocyanin biosynthesis
pop00943  Isoflavonoid biosynthesis
pop00944  Flavone and flavonol biosynthesis
pop00950  Isoquinoline alkaloid biosynthesis
pop00960  Tropane, piperidine and pyridine alkaloid biosynthesis
pop00965  Betalain biosynthesis
pop00966  Glucosinolate biosynthesis
pop00999  Biosynthesis of various plant secondary metabolites
pop01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
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