PATHWAY: ppf01100 Help Entry ppf01100                    Pathway                                 Name Metabolic pathways - Pseudomonas putida F1 Class BRITE hierarchy Pathway map ppf01100   Metabolic pathways Module ppf_M00002   Glycolysis, core module involving three-carbon compounds [PATH:ppf01100] ppf_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppf01100] ppf_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ppf01100] ppf_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:ppf01100] ppf_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ppf01100] ppf_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ppf01100] ppf_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ppf01100] ppf_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppf01100] ppf_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppf01100] ppf_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppf01100] ppf_M00012   Glyoxylate cycle [PATH:ppf01100] ppf_M00015   Proline biosynthesis, glutamate => proline [PATH:ppf01100] ppf_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:ppf01100] ppf_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ppf01100] ppf_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ppf01100] ppf_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ppf01100] ppf_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:ppf01100] ppf_M00021   Cysteine biosynthesis, serine => cysteine [PATH:ppf01100] ppf_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:ppf01100] ppf_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:ppf01100] ppf_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:ppf01100] ppf_M00026   Histidine biosynthesis, PRPP => histidine [PATH:ppf01100] ppf_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:ppf01100] ppf_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:ppf01100] ppf_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:ppf01100] ppf_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:ppf01100] ppf_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:ppf01100] ppf_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ppf01100] ppf_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ppf01100] ppf_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ppf01100] ppf_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ppf01100] ppf_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ppf01100] ppf_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ppf01100] ppf_M00063   CMP-KDO biosynthesis [PATH:ppf01100] ppf_M00082   Fatty acid biosynthesis, initiation [PATH:ppf01100] ppf_M00083   Fatty acid biosynthesis, elongation [PATH:ppf01100] ppf_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:ppf01100] ppf_M00087   beta-Oxidation [PATH:ppf01100] ppf_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:ppf01100] ppf_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:ppf01100] ppf_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:ppf01100] ppf_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:ppf01100] ppf_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:ppf01100] ppf_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:ppf01100] ppf_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:ppf01100] ppf_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:ppf01100] ppf_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:ppf01100] ppf_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ppf01100] ppf_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:ppf01100] ppf_M00149   Succinate dehydrogenase, prokaryotes [PATH:ppf01100] ppf_M00151   Cytochrome bc1 complex respiratory unit [PATH:ppf01100] ppf_M00155   Cytochrome c oxidase, prokaryotes [PATH:ppf01100] ppf_M00156   Cytochrome c oxidase, cbb3-type [PATH:ppf01100] ppf_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:ppf01100] ppf_M00168   CAM (Crassulacean acid metabolism), dark [PATH:ppf01100] ppf_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:ppf01100] ppf_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppf01100] ppf_M00417   Cytochrome o ubiquinol oxidase [PATH:ppf01100] ppf_M00419   Cymene degradation, p-cymene => p-cumate [PATH:ppf01100] ppf_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ppf01100] ppf_M00539   Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate [PATH:ppf01100] ppf_M00547   Benzene/toluene degradation, benzene => catechol / toluene => 3-methylcatechol [PATH:ppf01100] ppf_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:ppf01100] ppf_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:ppf01100] ppf_M00555   Betaine biosynthesis, choline => betaine [PATH:ppf01100] ppf_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:ppf01100] ppf_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ppf01100] ppf_M00621   Glycine cleavage system [PATH:ppf01100] ppf_M00622   Nicotinate degradation, nicotinate => fumarate [PATH:ppf01100] ppf_M00793   dTDP-L-rhamnose biosynthesis [PATH:ppf01100] ppf_M00844   Arginine biosynthesis, ornithine => arginine [PATH:ppf01100] ppf_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:ppf01100] ppf_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:ppf01100] ppf_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ppf01100] ppf_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:ppf01100] ppf_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:ppf01100] ppf_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ppf01100] ppf_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:ppf01100] ppf_M00957   Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:ppf01100] ppf_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:ppf01100] ppf_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:ppf01100] ppf_M00960   Lysine degradation, bacteria, L-lysine => D-lysine => succinate [PATH:ppf01100] ppf_M00970   Proline degradation, proline => glutamate [PATH:ppf01100] ppf_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:ppf01100] Organism Pseudomonas putida F1 [GN:ppf] Related pathway ppf00010   Glycolysis / Gluconeogenesis ppf00020   Citrate cycle (TCA cycle) ppf00030   Pentose phosphate pathway ppf00040   Pentose and glucuronate interconversions ppf00051   Fructose and mannose metabolism ppf00052   Galactose metabolism ppf00053   Ascorbate and aldarate metabolism ppf00061   Fatty acid biosynthesis ppf00071   Fatty acid degradation ppf00130   Ubiquinone and other terpenoid-quinone biosynthesis ppf00190   Oxidative phosphorylation ppf00220   Arginine biosynthesis ppf00230   Purine metabolism ppf00240   Pyrimidine metabolism ppf00250   Alanine, aspartate and glutamate metabolism ppf00260   Glycine, serine and threonine metabolism ppf00261   Monobactam biosynthesis ppf00270   Cysteine and methionine metabolism ppf00280   Valine, leucine and isoleucine degradation ppf00290   Valine, leucine and isoleucine biosynthesis ppf00300   Lysine biosynthesis ppf00310   Lysine degradation ppf00330   Arginine and proline metabolism ppf00332   Carbapenem biosynthesis ppf00340   Histidine metabolism ppf00350   Tyrosine metabolism ppf00360   Phenylalanine metabolism ppf00361   Chlorocyclohexane and chlorobenzene degradation ppf00362   Benzoate degradation ppf00364   Fluorobenzoate degradation ppf00380   Tryptophan metabolism ppf00400   Phenylalanine, tyrosine and tryptophan biosynthesis ppf00401   Novobiocin biosynthesis ppf00410   beta-Alanine metabolism ppf00430   Taurine and hypotaurine metabolism ppf00440   Phosphonate and phosphinate metabolism ppf00450   Selenocompound metabolism ppf00460   Cyanoamino acid metabolism ppf00470   D-Amino acid metabolism ppf00480   Glutathione metabolism ppf00500   Starch and sucrose metabolism ppf00520   Amino sugar and nucleotide sugar metabolism ppf00521   Streptomycin biosynthesis ppf00523   Polyketide sugar unit biosynthesis ppf00525   Acarbose and validamycin biosynthesis ppf00540   Lipopolysaccharide biosynthesis ppf00541   O-Antigen nucleotide sugar biosynthesis ppf00543   Exopolysaccharide biosynthesis ppf00550   Peptidoglycan biosynthesis ppf00552   Teichoic acid biosynthesis ppf00561   Glycerolipid metabolism ppf00562   Inositol phosphate metabolism ppf00564   Glycerophospholipid metabolism ppf00592   alpha-Linolenic acid metabolism ppf00620   Pyruvate metabolism ppf00621   Dioxin degradation ppf00622   Xylene degradation ppf00623   Toluene degradation ppf00624   Polycyclic aromatic hydrocarbon degradation ppf00625   Chloroalkane and chloroalkene degradation ppf00626   Naphthalene degradation ppf00627   Aminobenzoate degradation ppf00630   Glyoxylate and dicarboxylate metabolism ppf00633   Nitrotoluene degradation ppf00640   Propanoate metabolism ppf00643   Styrene degradation ppf00650   Butanoate metabolism ppf00660   C5-Branched dibasic acid metabolism ppf00670   One carbon pool by folate ppf00680   Methane metabolism ppf00730   Thiamine metabolism ppf00740   Riboflavin metabolism ppf00750   Vitamin B6 metabolism ppf00760   Nicotinate and nicotinamide metabolism ppf00770   Pantothenate and CoA biosynthesis ppf00780   Biotin metabolism ppf00785   Lipoic acid metabolism ppf00790   Folate biosynthesis ppf00791   Atrazine degradation ppf00860   Porphyrin metabolism ppf00900   Terpenoid backbone biosynthesis ppf00906   Carotenoid biosynthesis ppf00907   Pinene, camphor and geraniol degradation ppf00910   Nitrogen metabolism ppf00920   Sulfur metabolism ppf00930   Caprolactam degradation ppf00946   Degradation of flavonoids ppf00996   Biosynthesis of various alkaloids ppf00999   Biosynthesis of various plant secondary metabolites ppf01040   Biosynthesis of unsaturated fatty acids ppf01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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