KEGG   PATHWAY: ppsv00020
Entry
ppsv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Persicobacter psychrovividus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppsv00020  Citrate cycle (TCA cycle)
ppsv00020

Module
ppsv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppsv00020]
ppsv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppsv00020]
ppsv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppsv00020]
ppsv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppsv00020]
ppsv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppsv00020]
Other DBs
GO: 0006099
Organism
Persicobacter psychrovividus [GN:ppsv]
Gene
PEPS_37990  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PEPS_20870  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PEPS_01020  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PEPS_02410  leuB_1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PEPS_01210  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
PEPS_01200  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PEPS_22540  bfmBB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PEPS_01190  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PEPS_23780  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PEPS_22230  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PEPS_08360  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PEPS_07900  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PEPS_07910  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
PEPS_07890  sdhC; succinate dehydrogenase [KO:K00241]
PEPS_32010  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PEPS_25610  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PEPS_21670  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PEPS_17860  pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 [KO:K01610] [EC:4.1.1.49]
PEPS_02180  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PEPS_04420  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
PEPS_15250  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PEPS_28900  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppsv00010  Glycolysis / Gluconeogenesis
ppsv00053  Ascorbate and aldarate metabolism
ppsv00061  Fatty acid biosynthesis
ppsv00071  Fatty acid degradation
ppsv00190  Oxidative phosphorylation
ppsv00220  Arginine biosynthesis
ppsv00250  Alanine, aspartate and glutamate metabolism
ppsv00280  Valine, leucine and isoleucine degradation
ppsv00350  Tyrosine metabolism
ppsv00470  D-Amino acid metabolism
ppsv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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