KEGG   PATHWAY: ptai00920
Entry
ptai00920                   Pathway                                
Name
Sulfur metabolism - Pseudomonas taiwanensis
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
ptai00920  Sulfur metabolism
ptai00920

Module
ptai_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ptai00920]
ptai_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:ptai00920]
Other DBs
GO: 0006790
Organism
Pseudomonas taiwanensis [GN:ptai]
Gene
ICN73_24910  sulfate ABC transporter substrate-binding protein [KO:K02048]
ICN73_07560  sulfate ABC transporter substrate-binding protein [KO:K23163]
ICN73_07565  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
ICN73_07570  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
ICN73_07575  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
ICN73_05440  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
ICN73_05450  tauC; taurine ABC transporter permease TauC [KO:K15552]
ICN73_05445  tauB; taurine ABC transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
ICN73_05455  tauD; taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
ICN73_18320  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
ICN73_05420  sulfonate ABC transporter substrate-binding protein [KO:K15553]
ICN73_05725  ABC transporter substrate-binding protein [KO:K15553]
ICN73_05410  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
ICN73_05715  ABC transporter permease [KO:K15554]
ICN73_05405  ssuB; aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
ICN73_05720  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
ICN73_05415  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
ICN73_21480  msuE; FMN reductase [KO:K00299] [EC:1.5.1.38]
ICN73_05425  ssuE; NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
ICN73_11030  cysN; sulfate adenylyltransferase subunit CysN [KO:K00955] [EC:2.7.7.4 2.7.1.25]
ICN73_11025  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
ICN73_05300  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
ICN73_15725  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
ICN73_21955  quinoprotein dehydrogenase-associated SoxYZ-like carrier [KO:K17226]
ICN73_20740  PepSY domain-containing protein [KO:K00380] [EC:1.8.1.2]
ICN73_02100  PepSY domain-containing protein [KO:K00380] [EC:1.8.1.2]
ICN73_12750  bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha [KO:K00380] [EC:1.8.1.2]
ICN73_15940  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
ICN73_06370  NAD(P)/FAD-dependent oxidoreductase [KO:K17218] [EC:1.8.5.4]
ICN73_08070  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
ICN73_04520  glpE; thiosulfate sulfurtransferase GlpE [KO:K02439] [EC:2.8.1.1]
ICN73_19950  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
ICN73_00840  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
ICN73_02200  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
ICN73_05465  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
ICN73_16800  hypothetical protein [KO:K00640] [EC:2.3.1.30]
ICN73_26050  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
ICN73_08175  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
ICN73_03130  cystathionine gamma-synthase family protein [KO:K01739] [EC:2.5.1.48]
ICN73_14075  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
ICN73_21475  sfnG; dimethyl sulfone monooxygenase SfnG [KO:K17228] [EC:1.14.14.35]
ICN73_18200  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
ICN73_18195  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
ICN73_20400  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
ICN73_04660  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
ICN73_04670  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
ICN73_14425  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
ptai00260  Glycine, serine and threonine metabolism
ptai00270  Cysteine and methionine metabolism
ptai00680  Methane metabolism
KO pathway
ko00920   
LinkDB

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