KEGG   PATHWAY: rhe00020
Entry
rhe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia conorii subsp. heilongjiangensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhe00020  Citrate cycle (TCA cycle)
rhe00020

Module
rhe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhe00020]
rhe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhe00020]
rhe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhe00020]
rhe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhe00020]
Other DBs
GO: 0006099
Organism
Rickettsia conorii subsp. heilongjiangensis [GN:rhe]
Gene
Rh054_07100  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Rh054_06715  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Rh054_02000  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Rh054_01335  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Rh054_01330  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Rh054_06745  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rh054_04095  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rh054_03365  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Rh054_03370  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Rh054_01010  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rh054_00425  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Rh054_00995  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
Rh054_01005  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
Rh054_05565  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Rh054_02960  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Rh054_01970  pyruvate dehydrogenase e1 component, alpha subunit precursor [KO:K00161] [EC:1.2.4.1]
Rh054_01975  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Rh054_03905  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhe00010  Glycolysis / Gluconeogenesis
rhe00061  Fatty acid biosynthesis
rhe00071  Fatty acid degradation
rhe00190  Oxidative phosphorylation
rhe00220  Arginine biosynthesis
rhe00250  Alanine, aspartate and glutamate metabolism
rhe00280  Valine, leucine and isoleucine degradation
rhe00350  Tyrosine metabolism
rhe00470  D-Amino acid metabolism
rhe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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