KEGG   PATHWAY: rhn00240
Entry
rhn00240                    Pathway                                
Name
Pyrimidine metabolism - Rhizobium sp. N1341
Class
Metabolism; Nucleotide metabolism
Pathway map
rhn00240  Pyrimidine metabolism
rhn00240

Module
rhn_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rhn00240]
rhn_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rhn00240]
rhn_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rhn00240]
rhn_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rhn00240]
Other DBs
GO: 0006220 0006213
Organism
Rhizobium sp. N1341 [GN:rhn]
Gene
AMJ98_CH03127  carB; carbamoyl phosphate synthetase large subunit [KO:K01955] [EC:6.3.5.5]
AMJ98_CH03119  carA; carbamoyl phosphate synthetase small subunit [KO:K01956] [EC:6.3.5.5]
AMJ98_CH01672  pyrB; aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
AMJ98_PD00307  dihydroorotase protein [KO:K01465] [EC:3.5.2.3]
AMJ98_CH01671  pyrC-2; dihydroorotase 2 [KO:K01465] [EC:3.5.2.3]
AMJ98_CH00486  pyrC-1; dihydroorotase 1 [KO:K01465] [EC:3.5.2.3]
AMJ98_CH00551  pyrD; dihydroorotate dehydrogenase (quinone) [KO:K00254] [EC:1.3.5.2]
AMJ98_CH00490  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
AMJ98_CH00328  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
AMJ98_CH01977  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
AMJ98_CH01514  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AMJ98_CH02042  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
AMJ98_CH00617  Maf-like protein [KO:K06287] [EC:3.6.1.-]
AMJ98_CH00002  Maf-like protein [KO:K06287] [EC:3.6.1.-]
AMJ98_CH02236  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
AMJ98_CH00100  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
AMJ98_CH03779  5'-nucleotidase protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AMJ98_CH01872  surE; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AMJ98_CH00201  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
AMJ98_CH01815  cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AMJ98_CH03689  metallophosphoesterase domain-containing protein [KO:K09769] [EC:3.1.4.16]
AMJ98_CH02382  psuG; pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
AMJ98_CH00196  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
AMJ98_PE00212  codA; cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
AMJ98_CH02087  cytosine deaminase-like protein [KO:K01485] [EC:3.5.4.1 3.5.4.21]
AMJ98_CH00534  2'-deoxycytidine 5'-triphosphate deaminase protein [KO:K01494] [EC:3.5.4.13]
AMJ98_CH03952  nrdE; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
AMJ98_CH01800  nrdJ; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
AMJ98_CH03951  nrdF; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
AMJ98_CH01444  metal-dependent phosphohydrolase HD domain-containing protein [KO:K06952] [EC:3.1.3.89]
AMJ98_CH02210  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
AMJ98_CH00344  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
AMJ98_CH00199  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
AMJ98_CH03240  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
AMJ98_CH02963  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
AMJ98_CH03475  preT; dihydropyrimidine dehydrogenase subunit A [KO:K17722] [EC:1.3.1.1]
AMJ98_CH03476  preA; dihydropyrimidine dehydrogenase subunit B [KO:K17723] [EC:1.3.1.1]
AMJ98_CH03485  dht; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
AMJ98_CH03483  amaB; N-carbamoyl-L-amino acid hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
AMJ98_CH00363  allantoate amidohydrolase protein [KO:K06016] [EC:3.5.1.6 3.5.1.87]
AMJ98_PC00151  rutF; FMN reductase (NADH) [KO:K09024] [EC:1.5.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
rhn00030  Pentose phosphate pathway
rhn00220  Arginine biosynthesis
rhn00250  Alanine, aspartate and glutamate metabolism
rhn00280  Valine, leucine and isoleucine degradation
rhn00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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