KEGG   PATHWAY: rot00020
Entry
rot00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseivivax sp. THAF197b
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rot00020  Citrate cycle (TCA cycle)
rot00020

Module
rot_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rot00020]
rot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rot00020]
rot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rot00020]
rot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rot00020]
rot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rot00020]
Other DBs
GO: 0006099
Organism
Roseivivax sp. THAF197b [GN:rot]
Gene
FIV09_06590  gltA1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
FIV09_07800  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
FIV09_19360  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
FIV09_01335  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FIV09_01330  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FIV09_01315  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
FIV09_00385  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FIV09_01340  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FIV09_01350  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
FIV09_01415  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FIV09_01445  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FIV09_01405  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FIV09_01410  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
FIV09_11965  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
FIV09_06210  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FIV09_01365  mdh1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FIV09_14670  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
FIV09_15410  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
FIV09_00375  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FIV09_04325  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
FIV09_04320  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FIV09_00380  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rot00010  Glycolysis / Gluconeogenesis
rot00053  Ascorbate and aldarate metabolism
rot00061  Fatty acid biosynthesis
rot00071  Fatty acid degradation
rot00190  Oxidative phosphorylation
rot00220  Arginine biosynthesis
rot00250  Alanine, aspartate and glutamate metabolism
rot00280  Valine, leucine and isoleucine degradation
rot00350  Tyrosine metabolism
rot00470  D-Amino acid metabolism
rot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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