KEGG   PATHWAY: rpe00920
Entry
rpe00920                    Pathway                                
Name
Sulfur metabolism - Rhodopseudomonas palustris BisA53
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rpe00920  Sulfur metabolism
rpe00920

Module
rpe_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rpe00920]
rpe_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rpe00920]
rpe_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:rpe00920]
Other DBs
GO: 0006790
Organism
Rhodopseudomonas palustris BisA53 [GN:rpe]
Gene
RPE_1760  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K02048]
RPE_1768  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
RPE_1759  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
RPE_1769  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
RPE_1770  sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
RPE_1758  sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
RPE_1771  sulfate ABC transporter, ATPase subunit [KO:K02045] [EC:7.3.2.3]
RPE_3192  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
RPE_3205  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
RPE_3194  binding-protein-dependent transport systems inner membrane component [KO:K15554]
RPE_3195  ABC transporter related [KO:K15555] [EC:7.6.2.14]
RPE_3193  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RPE_0333  sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RPE_1761  sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RPE_0334  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RPE_1762  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RPE_4286  inositol monophosphatase [KO:K01082] [EC:3.1.3.7]
RPE_1767  phosphoadenylylsulfate reductase (thioredoxin) [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RPE_3076  conserved hypothetical protein [KO:K17222] [EC:2.8.5.2]
RPE_3077  conserved hypothetical protein [KO:K17223] [EC:2.8.5.2]
RPE_0849  conserved hypothetical protein [KO:K17226]
RPE_3075  thiosulfate-binding protein SoxY [KO:K17226]
RPE_3074  sulfur compound chelating protein SoxZ [KO:K17227]
RPE_3073  sulfate thiol esterase SoxB [KO:K17224] [EC:3.1.6.20]
RPE_3072  sulfur dehydrogenase subunit SoxC [KO:K17225]
RPE_3071  sulfur dehydrogenase subunit SoxD [KO:K22622] [EC:1.8.2.6]
RPE_1259  sulfite reductase (NADPH) alpha subunit [KO:K00380] [EC:1.8.1.2]
RPE_1765  nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein [KO:K00381] [EC:1.8.1.2]
RPE_3985  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17218] [EC:1.8.5.4]
RPE_3986  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17218] [EC:1.8.5.4]
RPE_3067  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17229] [EC:1.8.2.3]
RPE_3068  sulfide dehydrogenase (flavoprotein) [KO:K17229] [EC:1.8.2.3]
RPE_2035  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RPE_3185  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
RPE_2312  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
RPE_2734  Pyridoxal-5'-phosphate-dependent enzyme, beta subunit [KO:K01738] [EC:2.5.1.47]
RPE_2774  cysteine synthase [KO:K01738] [EC:2.5.1.47]
RPE_3624  cysteine synthase [KO:K01738] [EC:2.5.1.47]
RPE_4340  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
RPE_4877  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
RPE_4546  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
RPE_2874  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
RPE_4352  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
RPE_1074  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
RPE_0672  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
RPE_3803  Enoyl-CoA hydratase/isomerase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rpe00260  Glycine, serine and threonine metabolism
rpe00270  Cysteine and methionine metabolism
rpe00680  Methane metabolism
rpe00720  Carbon fixation pathways in prokaryotes
KO pathway
ko00920   
LinkDB

DBGET integrated database retrieval system