KEGG   PATHWAY: rty00020
Entry
rty00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia typhi Wilmington
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rty00020  Citrate cycle (TCA cycle)
rty00020

Module
rty_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rty00020]
rty_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rty00020]
rty_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rty00020]
rty_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rty00020]
Other DBs
GO: 0006099
Organism
Rickettsia typhi Wilmington [GN:rty]
Gene
RT0832  gltA; (R)-citric synthase [KO:K01647] [EC:2.3.3.1]
RT0786  acnA; Aconitase [KO:K01681] [EC:4.2.1.3]
RT0256  icd; IDH [KO:K00031] [EC:1.1.1.42]
RT0171  sucA; Alpha-ketoglutaric dehydrogenase [KO:K00164] [EC:1.2.4.2]
RT0170  sucB; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
RT0447  pdhD1; Diaphorase [KO:K00382] [EC:1.8.1.4]
RT0792  pdhD2; Diaphorase [KO:K00382] [EC:1.8.1.4]
RT0419  sucD; Succinate thiokinase [KO:K01902] [EC:6.2.1.5]
RT0420  sucC; Succinate thiokinase [KO:K01903] [EC:6.2.1.5]
RT0117  sdhA; Fumarate dehydrogenase [KO:K00239] [EC:1.3.5.1]
RT0086  sdhB; Fumarate dehydrogenase [KO:K00240] [EC:1.3.5.1]
RT0115  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
RT0116  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
RT0657  fumC; Fumarase [KO:K01679] [EC:4.2.1.2]
RT0365  mdh; Malic dehydrogenase [KO:K00024] [EC:1.1.1.37]
RT0252  pdhA; Pyruvate decarboxylase [KO:K00161] [EC:1.2.4.1]
RT0253  pdhB; Pyruvate decarboxylase [KO:K00162] [EC:1.2.4.1]
RT0517  pdhC; Lipoate acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rty00010  Glycolysis / Gluconeogenesis
rty00061  Fatty acid biosynthesis
rty00071  Fatty acid degradation
rty00190  Oxidative phosphorylation
rty00220  Arginine biosynthesis
rty00250  Alanine, aspartate and glutamate metabolism
rty00280  Valine, leucine and isoleucine degradation
rty00470  D-Amino acid metabolism
rty00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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