KEGG   PATHWAY: samy00020
Entry
samy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sandaracinus amylolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
samy00020  Citrate cycle (TCA cycle)
samy00020

Module
samy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:samy00020]
samy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:samy00020]
samy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:samy00020]
samy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:samy00020]
samy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:samy00020]
Other DBs
GO: 0006099
Organism
Sandaracinus amylolyticus [GN:samy]
Gene
DB32_001770  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
DB32_006309  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
DB32_006310  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
DB32_003399  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DB32_003678  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DB32_002724  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DB32_002010  Dihydrolipoamide acyltransferase [KO:K00658] [EC:2.3.1.61]
DB32_005885  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DB32_003681  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
DB32_003680  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
DB32_005587  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DB32_005588  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
DB32_002692  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
DB32_005586  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
DB32_004722  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
DB32_004719  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DB32_003679  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DB32_005317  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DB32_005604  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DB32_001914  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
DB32_005884  Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DB32_000883  Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DB32_001915  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
DB32_000882  Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
DB32_001916  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
DB32_000881  Dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
samy00010  Glycolysis / Gluconeogenesis
samy00053  Ascorbate and aldarate metabolism
samy00061  Fatty acid biosynthesis
samy00071  Fatty acid degradation
samy00190  Oxidative phosphorylation
samy00220  Arginine biosynthesis
samy00250  Alanine, aspartate and glutamate metabolism
samy00280  Valine, leucine and isoleucine degradation
samy00350  Tyrosine metabolism
samy00470  D-Amino acid metabolism
samy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system