KEGG   PATHWAY: slh00020
Entry
slh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurovum lithotrophicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slh00020  Citrate cycle (TCA cycle)
slh00020

Module
slh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slh00020]
slh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slh00020]
slh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slh00020]
slh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slh00020]
slh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slh00020]
Other DBs
GO: 0006099
Organism
Sulfurovum lithotrophicum [GN:slh]
Gene
YH65_10890  citrate synthase [KO:K01647] [EC:2.3.3.1]
YH65_08435  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
YH65_08440  ATPase [KO:K15231] [EC:2.3.3.8]
YH65_04080  hypothetical protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YH65_08295  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
YH65_05855  pyruvate dehydrogenase [KO:K00382] [EC:1.8.1.4]
YH65_08250  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YH65_08245  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YH65_08240  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
YH65_08255  oorD; 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
YH65_08260  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
YH65_08265  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
YH65_05815  fumarate reductase [KO:K00239] [EC:1.3.5.1]
YH65_05820  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
YH65_05825  heterodisulfide reductase subunit B [KO:K00241]
YH65_09145  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
YH65_09140  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
YH65_09150  fumarate reductase [KO:K25996]
YH65_08280  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
YH65_08275  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
YH65_08270  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
YH65_08285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YH65_08290  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YH65_06125  hypothetical protein [KO:K00116] [EC:1.1.5.4]
YH65_06485  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
YH65_06475  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
YH65_06785  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
YH65_06775  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
YH65_06795  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
YH65_05860  hypothetical protein [KO:K00627] [EC:2.3.1.12]
YH65_10060  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
YH65_10055  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
YH65_10070  porC; pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
YH65_10065  porD; pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slh00010  Glycolysis / Gluconeogenesis
slh00061  Fatty acid biosynthesis
slh00071  Fatty acid degradation
slh00190  Oxidative phosphorylation
slh00220  Arginine biosynthesis
slh00250  Alanine, aspartate and glutamate metabolism
slh00280  Valine, leucine and isoleucine degradation
slh00350  Tyrosine metabolism
slh00470  D-Amino acid metabolism
slh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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