KEGG   PATHWAY: slz00020
Entry
slz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus lutrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slz00020  Citrate cycle (TCA cycle)
slz00020

Module
slz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slz00020]
slz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slz00020]
slz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slz00020]
slz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slz00020]
slz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slz00020]
Other DBs
GO: 0006099
Organism
Staphylococcus lutrae [GN:slz]
Gene
B5P37_00760  citrate synthase [KO:K01647] [EC:2.3.3.1]
B5P37_10960  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B5P37_00755  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B5P37_11175  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B5P37_11170  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B5P37_11615  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5P37_05650  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5P37_09545  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5P37_10640  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B5P37_10645  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B5P37_10390  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B5P37_10385  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B5P37_09785  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B5P37_09790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B5P37_09780  succinate dehydrogenase [KO:K00241]
B5P37_01500  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B5P37_07880  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B5P37_05220  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
B5P37_03915  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
B5P37_09635  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B5P37_01205  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B5P37_05665  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B5P37_09530  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B5P37_05660  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
B5P37_09535  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
B5P37_05655  dihydrolipoyllysine acetyltransferase [KO:K00627] [EC:2.3.1.12]
B5P37_09540  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slz00010  Glycolysis / Gluconeogenesis
slz00053  Ascorbate and aldarate metabolism
slz00061  Fatty acid biosynthesis
slz00071  Fatty acid degradation
slz00190  Oxidative phosphorylation
slz00220  Arginine biosynthesis
slz00250  Alanine, aspartate and glutamate metabolism
slz00280  Valine, leucine and isoleucine degradation
slz00350  Tyrosine metabolism
slz00470  D-Amino acid metabolism
slz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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