KEGG   PATHWAY: sng00020
Entry
sng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Simkania negevensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sng00020  Citrate cycle (TCA cycle)
sng00020

Module
sng_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sng00020]
sng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sng00020]
sng_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sng00020]
sng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sng00020]
Other DBs
GO: 0006099
Organism
Simkania negevensis [GN:sng]
Gene
SNE_A07020  cIT; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
SNE_A12090  acO2; putative aconitate hydratase 2 [KO:K01681] [EC:4.2.1.3]
SNE_A03720  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SNE_A11080  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SNE_A11090  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SNE_A03690  bfmBB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SNE_A01990  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SNE_A11100  dld1; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
SNE_A16800  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SNE_A16810  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SNE_A01370  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SNE_A01380  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SNE_A01360  putative uncharacterized protein [KO:K00241]
SNE_A04020  putative fumarate hydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
SNE_A04010  hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
SNE_A14840  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SNE_A07010  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SNE_A19550  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
SNE_A08100  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SNE_A08110  pdhB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
SNE_A08120  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sng00010  Glycolysis / Gluconeogenesis
sng00053  Ascorbate and aldarate metabolism
sng00061  Fatty acid biosynthesis
sng00190  Oxidative phosphorylation
sng00220  Arginine biosynthesis
sng00250  Alanine, aspartate and glutamate metabolism
sng00280  Valine, leucine and isoleucine degradation
sng00350  Tyrosine metabolism
sng00470  D-Amino acid metabolism
sng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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