KEGG   PATHWAY: vra00020
Entry
vra00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vigna radiata (mung bean)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vra00020  Citrate cycle (TCA cycle)
vra00020

Module
vra_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vra00020]
vra_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vra00020]
vra_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vra00020]
vra_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vra00020]
vra_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vra00020]
Other DBs
GO: 0006099
Organism
Vigna radiata (mung bean) [GN:vra]
Gene
106774381  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
106764674  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
106762674  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
106754137  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
106757992  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
106777890  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
106762679  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
106768689  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
106754078  ATP-citrate synthase beta chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
106756277  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
106762010  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
106777667  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
106765092  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
106760787  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
106774537  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
106778084  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106764692  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
106772699  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
106768314  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
106770733  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
106759201  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
106765110  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
106760144  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
106765435  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
106768284  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
106762024  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106772816  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106777639  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
106765582  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
106762873  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
106777138  uncharacterized protein LOC106777138 [KO:K00236]
106759311  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
106772793  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
106771344  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
106772259  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106773703  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
106756295  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106769100  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
106768706  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
106777641  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
106778711  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
106768556  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
106760161  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
106780359  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
106762808  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
106759465  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
106775994  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
106772049  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
106778151  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
106761900  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
106772727  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
106769639  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vra00010  Glycolysis / Gluconeogenesis
vra00053  Ascorbate and aldarate metabolism
vra00061  Fatty acid biosynthesis
vra00062  Fatty acid elongation
vra00071  Fatty acid degradation
vra00190  Oxidative phosphorylation
vra00220  Arginine biosynthesis
vra00250  Alanine, aspartate and glutamate metabolism
vra00280  Valine, leucine and isoleucine degradation
vra00350  Tyrosine metabolism
vra00470  D-Amino acid metabolism
vra00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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