KEGG   PATHWAY: vvo00020
Entry
vvo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vicia villosa (hairy vetch)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vvo00020  Citrate cycle (TCA cycle)
vvo00020

Module
vvo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vvo00020]
vvo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vvo00020]
vvo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vvo00020]
vvo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vvo00020]
vvo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vvo00020]
Other DBs
GO: 0006099
Organism
Vicia villosa (hairy vetch) [GN:vvo]
Gene
131662448  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
131662451  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
131594952  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
131630847  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
131650727  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
131595279  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
131632095  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
131599311  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
131629066  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
131652005  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
131601759  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
131639026  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
131642534  isocitrate dehydrogenase [NADP], chloroplastic-like [KO:K00031] [EC:1.1.1.42]
131652713  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
131652719  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
131637774  isocitrate dehydrogenase [NADP], chloroplastic-like [KO:K00031] [EC:1.1.1.42]
131620897  isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
131641175  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
131644609  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
131651974  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
131660878  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
131609005  uncharacterized protein LOC131609005 [KO:K00164] [EC:1.2.4.2]
131649122  uncharacterized protein LOC131649122 [KO:K00164] [EC:1.2.4.2]
131635809  uncharacterized protein LOC131635809 [KO:K00164] [EC:1.2.4.2]
131615793  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
131630643  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
131631046  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131595267  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131653319  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
131632383  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131608228  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
131632260  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
131652101  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
131609094  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
131635958  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
131603890  succinate dehydrogenase cytochrome B subunit, mitochondrial-like isoform X1 [KO:K00236]
131631042  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
131601757  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
131639015  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
131661739  uncharacterized protein LOC131661739 [KO:K25801]
131633972  uncharacterized protein LOC131633972 [KO:K25801]
131616831  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
131643943  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
131644289  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
131595816  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
131616072  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
131621225  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
131652301  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
131635218  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
131620371  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131620374  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131602794  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
131641373  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131641376  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131629144  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131651767  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131632650  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131617229  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131619077  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131619079  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131619081  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131620108  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131620110  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131639527  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131610780  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
131651503  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
131616501  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131636504  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131620498  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
131638382  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
131603545  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
131608694  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
131646896  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
131652212  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
131652213  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
131623368  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
131624834  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
131642573  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
131642623  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
131643699  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
131643797  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
131616236  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vvo00010  Glycolysis / Gluconeogenesis
vvo00053  Ascorbate and aldarate metabolism
vvo00061  Fatty acid biosynthesis
vvo00062  Fatty acid elongation
vvo00071  Fatty acid degradation
vvo00190  Oxidative phosphorylation
vvo00220  Arginine biosynthesis
vvo00250  Alanine, aspartate and glutamate metabolism
vvo00280  Valine, leucine and isoleucine degradation
vvo00350  Tyrosine metabolism
vvo00470  D-Amino acid metabolism
vvo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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