Prunus avium (sweet cherry): 110752441
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Entry
110752441 CDS
T05161
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110752441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110752441
Enzymes [BR:
pavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110752441
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110752441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_24
ABC_tran
ATP_bind_1
AAA_29
FtsK_SpoIIIE
MMR_HSR1
GTP_EFTU
SRPRB
T2SSE
Motif
Other DBs
NCBI-GeneID:
110752441
NCBI-ProteinID:
XP_021808788
UniProt:
A0A6P5S4S5
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MAQGGGAKQVKLERESELRIEVGNDAPLKLRLLNGTAEIFGTELPPEIWLTFPPRLKFAV
FTWYGATIEMDGSTETDYTADETPNISYVNVHAVLEERRNRAKASPPDDSNSSQPQGPRV
IVVGPTDSGKSTLSKMLLSWAAKQGWKPTFVDLDIGQGAITIPGCIAATPIEMPIDPVEG
IPLEIPLVYFYGHTTPSNNVDLYKVLVKELAQVIERQFSANAESRAAGMVINTMGWIEGQ
GYELLLHAIDTFNANVVLVLGQEKLCSMLRDVLKNKPGVDVVKLQRSGGVVSRNAKFRQK
SRSHRIREYFYGLANDLSPHSNIANFSDLSVFRIGGGPQAPRSALPIGAEPAADPTRLVP
VNINRDLLQTVLAVSFAKDPDQIISSNVAGFIYITDIDLQRKTITYLAPSAGDLPSKYLI
AGNLPWLET
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaggaggtggagcaaagcaggtgaaattggaacgagagagcgaacttagaatc
gaagtgggcaacgacgcgcctctcaagcttcggctgctcaatggcacagccgagatcttt
ggcaccgagctcccccctgaaatctggctcaccttcccacccaggctcaagtttgctgtt
tttacttggtatggagcaacaattgagatggacggcagtacggaaactgattacaccgct
gatgagaccccaaacatcagttatgtaaatgtgcatgccgtactggaagaacggagaaac
cgtgctaaagcctcgccgcctgatgactccaattcttctcagcctcagggcccgagggtg
attgttgtgggacctacagattctgggaaaagtaccttgtccaaaatgcttcttagttgg
gcagctaagcaaggatggaagcctacttttgtcgacttggatattggacaaggagctata
acaattcccggatgcattgccgctactcctattgaaatgcctattgatccggttgaagga
attcctcttgaaattccccttgtttatttctatgggcacacaactcctagtaacaatgta
gatttatacaaagtacttgtgaaggagcttgctcaagtgatagagagacaattttctgct
aatgctgaatctcgagctgctggaatggtgatcaacactatgggatggatagaaggtcaa
ggctatgagttgcttcttcatgcaattgatacattcaatgccaatgttgtcttagttttg
ggacaggaaaagctttgcagcatgctcagagatgtactaaagaacaagcccggtgtggac
gttgttaaacttcaaagatcagggggtgttgtatccaggaatgcgaaattccgtcaaaaa
tccaggagtcataggataagggaatatttttatggccttgcaaatgatctgagcccgcat
tctaatatcgcaaatttcagtgatttatctgtctttcgaattggtggcgggccacaggcc
ccacgttcagctttgccaattggtgcagagcctgccgcagatcctacaagattggtgcct
gtgaatattaacagggatttgctccagacggttctcgctgtttcattcgccaaggatcct
gatcaaattatttctagtaatgttgctgggtttatttatatcacagacattgatcttcag
aggaagacaattacatatcttgcaccatctgcgggcgatcttccaagcaaatatttgatt
gcaggaaacttgccatggcttgaaacatga
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