Paracoccidioides lutzii Pb01: PAAG_05397
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Entry
PAAG_05397 CDS
T02230
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pbl
Paracoccidioides lutzii Pb01
Pathway
pbl03020
RNA polymerase
pbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAAG_05397
09124 Replication and repair
03420 Nucleotide excision repair
PAAG_05397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbl03021
]
PAAG_05397
03400 DNA repair and recombination proteins [BR:
pbl03400
]
PAAG_05397
Enzymes [BR:
pbl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAAG_05397
Transcription machinery [BR:
pbl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PAAG_05397
DNA repair and recombination proteins [BR:
pbl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PAAG_05397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF5828
Motif
Other DBs
NCBI-GeneID:
9096022
NCBI-ProteinID:
XP_015699791
UniProt:
C1H3Q4
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MASVKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRL
GTIDRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTN
DQKYLEALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSHGGCGNMQ
PQIRKEGISLVGTWKPNKNRDMMDDMDIQQPEKRQITPQMALNIFRNISEEDVRLMGLSN
DYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNVTRCEQEG
SPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGK
RVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPGAR
YVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESMMAHRVRV
MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMG
IVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGKQLISMVL
PPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGATGGGIIHTIFNEY
GPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDEITASA
TDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIIN
ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA
MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAH
IENQRVDIIKCSDEKFRERFRVDLMDPERTLSPNVLEQATEIAGDIEVQTYLDEEWEQLL
KDRAFMRAAAKEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRL
VVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAM
ANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMT
VYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEADRDMVESYFIIP
EDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIAVIFSDNNADEQVI
RIRQIQDTKQDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFINEKSRVRVLEDGSL
HQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFGIEATRTALLREL
TQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLDA
AAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAGLMTADGKGLLGDG
AATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSP
GGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPAYS
PTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPALGGS
TGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFS
PT
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgtcaaattcccctattccaaggcgcagctgcgcacgataaaggagattcag
tttggtcttctctcccctgaggagatcaagcggatgagtgtggtccatgtggagtatcca
gagactatggacgagcaacggcaacgcccccgtgagaaaggtctgaatgatccacgtctc
ggtaccattgaccgtaattggcgctgtgccacttgtgaagaaggaataaatgactgccct
gggcattttggtcatatcgagctttccacacctgttttccatattggtttcctgactaag
atcaagaaactgttggaaactgtttgccataactgtggaaagatcaaggccaatacgaac
gaccagaagtatttggaagcgctccgtttccgcgatccgaagagacgctttgatgcgatc
tggagactatctaaagacgtcctaatctgcgaagctgatcctaccccagatgatgacgac
cctttctcgaaagaagcttcgaagcctgtgcgctcccacggtggttgcggaaatatgcag
ccacaaatccgaaaagagggtattagtttggttggaacttggaagcctaacaagaatcgc
gatatgatggacgacatggatatccaacagcccgagaagcgacaaattacgccacagatg
gcgttgaatatattcaggaatatttctgaagaggatgttcgtttgatgggattgagcaac
gattatgcgagacctgaatggatgatcatcaccgttctcccagtccctcctccaccagtc
cgtcctagtgttctcgtaggtggaagtggaagcggtcagcgcggagaggatgatttgaca
tataaactggctgagatcgtacgtgcgaatcagaatgttaccagatgcgaacaggaaggc
tctcctgagcacgtggtgcgagaatttgagtccctgctgcagtaccatgtcgccacgtat
atggacaatgatattgccggacagccacaagcaatgcaaaagtcaaatcgacctgtcaag
gccatacgcggccgtctgaaggggaaggaaggtcgtctgcgtcagaacttgatgggaaaa
cgtgttgatttttcggctcgtactgttattacgggtgatccgaatctgtccttggacgaa
gtcggagttcctatcagcattgcgcagactttgacctaccccgaggtcgtcactcctttc
aacattgctaaattaggggagcttgttgacaatggcccggatattcatccaggagcccgt
tacgttattcgcagcaccggtgagcgcattgacttgcgccatcacaaaggtggaggagga
agaaacttcttacagtatggatggagagtggagcgccacatcgtagacggggatgtgatc
cttttcaatcggcaaccgtctttgcacaaagaatctatgatggctcaccgcgtccgcgta
atgccttactcgacattccgcctgaacttgtccgtcactaccccttacaacgccgatttc
gatggtgacgaaatgaacttgcacgttccgcaaagcgaagaagctcgtgctgagctcagt
caactgtgcatggtgcctttacaaatagtatccccccaacgtaatggtccgttgatgggc
attgtacaggataccctttgtggaatctacaagatttgtcgacgtgacgttttcctttca
aaggagcaggtaatgaacattttgctttgggtcccagactgggatggtgtaattcctcaa
ccagctattttgaaacccagaccaagatggactgggaaacagcttattagcatggttctt
ccccctggtctaaatcttcttcgagttgatcgtgatcgggctccccgttcggagaaattc
tcaccacctgctgatggtggagtgttggtacacggaggcgagcttatgtacggaatgttt
tccaagaaaacggttggagcaactggtgggggtatcatccatactattttcaatgagtat
ggccccgaaacggcgatgaacttctttaatggcgctcaaactgtcgtcaactactggcta
cttcaccatggcttcagtattggaattggtgacacgattcctgatcttcctacgatccaa
aaaattgaaaacgcagttcgtgtgagaaaggaggaagttgatgagatcacagccagcgca
acggataatactctcgagccccttccaggtatgaatgtccgtgagacattcgagagtaag
gtgtcccgcgctctgaacaatgcccgtgatgaggctggaacggagacagaaaagagcttc
aaggacttgaacaacgctgtccaaatggcgcgttctggttcaaaaggttcgattatcaat
atttctcaaatgactgctgttgttggccagcaatccgtcgaaggaaaacgtattccgttc
ggtttcaagtaccgtaccttgccgcatttcacgaaggacgattattcgccagaatctcga
ggatttgttgagaactcgtatctccgaggcctcactcccaccgagttctttttccatgcc
atggctggtcgtgagggtctcattgatactgctgttaaaacagctgaaactgggtacatc
cagcggaagcttgttaaggctcttgaggaggtcatggttaaatatgacggtaccgttcgt
aactcactcggtgatgtggttcagtttctgtacggagaggatggtctagatggagcgcat
attgagaatcagcgcgtcgatattattaaatgctcagacgaaaagttccgtgagagattc
cgagttgatctgatggatcctgaaagaactctctcaccgaatgtgttagagcaagccact
gaaattgctggcgatatcgaagtccagacgtaccttgatgaggaatgggaacaacttttg
aaggaccgagctttcatgcgagccgcggccaaggaagatgacgagatgatgcaattgcca
attaatgtgcagcgaattcttgagtccgctaaaacgatatttagaattcgtgaaggcgca
attagtgatttgcatccggcggaggtcattcctcaagttagagcactgctggatcgcctt
gtcgttgtccgtggtgacgatgtaatctctcgtgaagctcaagaaagcgctactttactg
tttaaggctcagctccgctcccgccttgcattccggagacttgtcacggaatactcgctt
aacaaactcgccttccaacacgtattaggagccatcgaaaatcgattctccagagctatg
gcaaatccaggtgaaatggtgggcgttttggcggcacagtcaattggagagccggcaacg
cagatgaccttgaataccttccattttgctggtgtgtcgtccaagaacgttaccctcggt
gtaccgcgtctcaaggaaattctcaatgtggctacgcatatcaagactccctccatgaca
gtctatcaagattctagtcgcgcaatggacaaggaatctgccaagcaattacgtagtgtt
gttgaacatacaagcttgagatctgttactgaagcaacggagatctactacgaccctgac
attcaatctactgtgattgaagcggatcgtgacatggttgaatcgtatttcattatccct
gaagatgtcgcagatgattcaagccgtcaatccaaatggctactcagaattattctgagc
cgaccgaagcttctcgataaaaatcttactgtccaagacgtcgcaatgaggataaaagac
gcatatcctcaagacattgcagttatcttcagtgataataatgctgatgagcaggttatt
cgtatccgtcaaatccaggacacaaagcaagatgacgatgatgataccgagtatgatgtg
actctgaagaagttggaaggccatttgcttgatacgcttactctacgaggtgtggcgggt
attgaacgtgcattcattaacgagaaatctcgagttcgcgtcttagaagatggatctctg
catcaaagcagtgaagaccccctgtgtaaagagtgggttctcgaaaccagcgggtcagcg
cttggcgaagtcttgactatccctggagtggatacaactcgcacatattccaatcagttc
gttgagattcttgaagtatttggtatcgaagctactcgaaccgccctattgcgagagttg
acgcaggtgctcgccttcgatggttcatatgtcaatcaccgtcatttggccctccttgtc
gatgtcatgacttcgagaggtttccttatggccgtcactaggcatggtatcaatcgtgct
gatactggcgctttgatgagatgttctttcgaggaaacagtggaaattctacttgatgcc
gctgcatttgctgagttggatgactgtcgtggtgtatctgagaatctgattttgggccaa
atggccccagctggtaccggagagtttgatgtttacctggatcagaatatgctcatggga
gttgtttccagcaacgcagggctgatgaccgcggatggcaaaggtcttctcggagatgga
gctgcaacaccttacgatagcaactccccactacaggacaacatgtatatcggcacacca
gaccctgactccgctttctctcccatcagacaagctggatcggagacacctgcaggattc
accgaatatcaagcccctggatttagcggtggcttcagtcctcacggcgcgagaagtccc
ggtggaggctactctcctagcagtccattcaataccagtccaacttctcctcgctactcg
ccctcatctggatactccccaacttctcctggcatgagcatcacgagccccagattcatg
tcctcccctggattttcgccggcaagtcccgtttttgcacccacgtcaccagcctactcc
ccaacttctcctggctatcagcaatcgccaacttcgccatcatattctcctacatctcct
ggtttttctcctacgtcaccaaattacagtccaacatcaccaagtttcagtcctgcctcg
cctgcattcagtcctacttctcccagctacagtcctacaagccctgcgcttggaggatcg
actggaagacatttatctcctacttctcccacctcgcccaaatatacccccacttctcct
ggttggtccccaaccagcccagaaacctactcacccacttctccgaacttctcaggctcg
ccaacttcacctggtggaccaacttctcctggttacagcccgacttccccaacctttagt
cctacgtaa
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integrated database retrieval system
