Paraburkholderia bryophila: NDK50_27640
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Entry
NDK50_27640 CDS
T08797
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NDK50_27640 (pdeR)
Enzymes [BR:
pbry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
NDK50_27640 (pdeR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_8
GGDEF_2
PAS_3
Motif
Other DBs
NCBI-ProteinID:
WCM24577
LinkDB
All DBs
Position
2:complement(1431403..1433406)
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AA seq
667 aa
AA seq
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MNDDQHEQVLFAQFGTSSPCWRLSTDSNALELTPVTGDMPANVAIPLNPQQASQIRCLTG
VTSHLIVDVRLFGEPLRLHLVGKKLNSNTWAGTASAYDDTESVARDLVHGLSFAEQVVSE
VNSVVVIVDRHGRIQRFNRLAEELTGVKEENIIGRNVWALFMSTEDGAASSQNIAGFFNR
GVSYEVERRVKTVHGERLFLFRNKFVQSGSGVEEQFLICSGTDITEERLAQERLTLLANT
DALTGLANRNAIQDKIRVAIEEAAPGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSS
AISTCLNEGDVLARLGGDEFIVLAAKGTAHELEFTAQRILERMRTPFALGLVEVYTGCSI
GIACYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEYMWLDTNLRRGLD
EGQLTLHYQPKLSLATGTVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMN
TAAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALQNARLDPCLIDLELTESCLI
EDEAAALELIKQFRVLGAQVHLDDFGTGYSSLSQLGRIPLDLIKLDRSFVRSINADTKAQ
ALVRSMVAVAQELDLKVVAEGIETESEELFMKGLGVDYVQGFLYGQAMPAAEFERWLQDR
QKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaccaacacgagcaggtgctttttgcccagttcggcacaagcagcccatgc
tggcgtctgtcgaccgacagcaacgcgcttgaactcacgcccgttaccggcgacatgccc
gccaatgtcgcgattccgcttaatcctcaacaagcttcgcagattcgttgcctgaccggc
gtcacctcgcatctgattgtcgacgtgcgcctgttcggcgagccgttgcgtctgcatctg
gtcggcaagaaactcaacagcaacacctgggccggcaccgcgtcggcgtacgacgacacc
gaatcggtggcgcgcgatctggtgcatggtctgtcgttcgccgagcaggtcgtctccgaa
gtgaattcggtcgtggtgatcgtggacaggcacgggcgaatacaacgcttcaaccggctt
gccgaggaactcaccggcgtcaaggaagagaacatcatcggccgtaacgtgtgggcgctg
ttcatgtccaccgaagacggcgccgcctccagccagaacattgcgggcttcttcaatcgc
ggcgtgtcgtatgaagtcgagcgtcgtgtcaagacggtgcacggcgaacggctcttcctg
ttccgcaacaaattcgtccagagcggcagcggcgtcgaagagcaattcctgatctgctcg
ggcaccgacatcaccgaagaacgcctcgcgcaggaacggctcaccctgttggccaatacc
gacgcgctcaccggcctcgccaaccgcaacgcgatccaggacaagatccgcgtcgcgatc
gaagaagcggcgcccggtgaagcagtcggcgtactgttcctcgacctcgacaacttcaag
aaggtcaacgaccactacggtcacgtattcggcgaccggctgatccgcgacgtgtcgtcg
gccatcagcacctgcctgaacgaaggcgacgtgctcgcgcggctgggcggcgacgagttc
atcgtgctcgccgccaagggcacggcgcacgaactcgaattcaccgcgcaacgcattctc
gagcgcatgcgcacaccgttcgcgctcggtctcgtggaggtctacacgggctgctcgatc
ggcattgcgtgctatccggaacatggcgacagtctcgaatcgctgatccgttcggccgac
acggccatgtacgtcgccaaagacgaaggcaagcgcacgcaccgcgtgttctcgccggac
atgaaccgccgggtcgccgaatacatgtggctcgacaccaacctgcggcgcgggctcgac
gaaggccagcttacgttgcattaccagcccaagctgtcgctcgccaccggcacggtgcaa
ggcgccgaagcgctggtgcgctggaattcgccggagcgcgggcagatcatgccggcggag
ttcatccgctatgcggaagaatccggcctgatcggcgtgctcggccgctgggtcatgaat
accgccgcgaagcaggccgccaaatggaaagccgacggctacaacctgcgcatcgcgatc
aacgtatcggcgcggcagctggtcgatacggcggtggtgcgccatttcaccgaggcgttg
cagaacgccaggctcgacccctgcctgatcgacctcgaactcaccgagagctgcctgatc
gaagacgaagcggccgcgctggaactcatcaaacagttccgcgtgctcggcgcgcaggtg
catctggacgacttcggcacgggctactcgtcgctgtcgcaactgggccgcattccactc
gacctgatcaagctcgaccgcagtttcgtacgctcgatcaacgccgacaccaaggcgcag
gcgctggtgcgctcgatggtggcggttgcccaggagctggatctgaaggtggtggccgag
gggatcgaaaccgaatcggaagaactgttcatgaaggggctcggcgtcgattacgtgcag
ggtttcctgtacggccaggccatgccggccgctgaattcgaacgctggttgcaggatagg
cagaagctcagactgattgcctga
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