Pieris brassicae (large cabbage white): 123710054
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Entry
123710054 CDS
T08632
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123710054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbx03400
]
123710054
DNA repair and recombination proteins [BR:
pbx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123710054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
Motif
Other DBs
NCBI-GeneID:
123710054
NCBI-ProteinID:
XP_045517694
EnsemblRapid:
ENSPBSG00000002650
LinkDB
All DBs
Position
5:17526246..17545829
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AA seq
1119 aa
AA seq
DB search
MSKRNTVGANNTLFNYFTKTPPSTKKVKLSVTNEIKNTTETVETIENKKRERQTTPSPRE
DKNNHTDDESPIAPKKRKRIRLNPCDTDDSDTENKVISIRNTSHLFKFPEDNKIKTKENT
SLGNKLQESFQYDPSVTPKSKIKKTPVVIQVKTESQESPVIAEEGDWVHCKLDWLKPDKI
KDAKGHRPDHPEYEPTTLYVPKEFMKSQTPAHRQWWELKSAHYDCVLFFKVGKFYELYHM
DAAVGVNELGFSYMKGEFAHSGFPESAYARMSSTLVSKGYKVARVEQTETPDMMQDRCKL
EQKTSKHDKVVRREICQVSVRGAQVCGLQDNGPSESNSPFMMAVAEEENNGISTYGVCFV
DTSIGQFHIGQFKDDKHSSRLLTTLAHFPPALIISDRKSCTVRTSKLLSTHCHSARRETL
NMAPPEKTLKLLAEKYYRTNDNGQWPEGILQFLHEGDVLGLTPSTNSSLAIKALGGCVAF
LTECLLDIQILGMSQFSEYTPPDVLNMTLQNEKTQWTGGSTMVLDSITLRNLRIVQDEGC
LYDKLNLCSTPMGKRLLYQWVCSPSCDLTVIKERQKAIKTLFENQDICQEAKSLLTTLPD
LERLLAKVHALGNLKKSKDHPDSRAILYEEKTYSKKKVLDFISVLNGYTAALKLTELFCD
TDSALLKRITQLSPDGKYPDYRETLKFFKEGFNQTQAEKEGKILPEAGVDQEYDNTLELI
EEIEQELKEYLVEQEKYFKCRIKYVGSDKKRYQMEIPQNAASKAGGDYHMEGARKGFKRY
STAETKDFLARMMAAEEQKRVVLKDLSRRIFEKFSSHYSQWAAAVQCVATLDVLLSLCEF
ARQQTSDICLPELTFGDTQPYISIVEGRHPCIPIVNDFIPNDTSLGENGASLLLLTGPNM
GGKSTLMRQVGLLTVLSHLGSYVPAQECKLSLVDRIFTRLGASDDILSGHSTFLVEMNET
AAIIKHASLHSLVLLDELGRGTSTYDGTAIASGVCVELAERGCRVLFSTHYHTLVTHLAT
HPNVQLGHMACMVETEETERDDIPEETITFLYKLSPGACPKSYGFNAAKLAGIPQEITRR
ARNISKKLETEANLIRAFKEIMKVGQVSNMRTLLAELTI
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgaaataccgtcggcgctaataatactctttttaattattttaccaaaact
ccgccaagtacgaagaaagtgaaacttagtgtaactaatgaaataaaaaatactactgaa
actgtagagactatagaaaacaaaaagagagaaaggcaaaccacaccctctccaagagaa
gacaaaaataatcacacagacgatgaatctccaattgcaccaaagaaaagaaagagaatc
cgtcttaatccttgtgatacagatgattctgatactgaaaacaaagtaatctccattaga
aacaccagtcatttgtttaaatttccagaagataataaaataaaaacaaaggagaatact
tcattaggaaataaattgcaagaaagttttcaatatgacccttctgttacaccaaaaagt
aaaattaagaagactccagttgtaattcaagttaaaactgagtctcaagaatcaccagtt
attgctgaggaaggtgattgggttcattgcaaactagactggctcaagccggataaaatc
aaagatgccaagggacataggccagaccatccagaatatgaaccaaccacactttatgta
cctaaggaatttatgaagagtcagactccggctcatagacagtggtgggagttaaaatca
gcgcactacgattgtgtacttttctttaaagtgggaaagttctatgagttgtatcatatg
gatgctgctgtgggtgtcaatgaactgggcttctcttacatgaagggtgaatttgcccat
tcggggtttccggaaagtgcctacgcgcgaatgtcttcaactttagtgtctaagggatat
aaagtagcacgagttgaacaaacagagacccctgatatgatgcaggatagatgtaaacta
gaacaaaaaacaagtaagcacgacaaagtggtccgtcgtgagatttgccaagtgtctgtg
cgaggggcacaagtttgcggccttcaagacaatggtccttcggagtcgaactcgccattt
atgatggctgtcgctgaagaggaaaacaatggaataagtacgtacggggtgtgttttgtt
gatacgtctataggtcaattccacatcggtcagtttaaagacgataaacactcttcgcgg
ctgctcacaactcttgcgcatttcccgcctgctttgattatctccgatcgcaagtcatgc
acagtacgaacaagcaaactcctgtccacacattgtcatagtgcgagaagggaaacgtta
aatatggcgccaccagagaaaacgctgaaattgttggccgaaaaatattataggacaaat
gataatggacagtggccggaggggatattgcaatttttacatgaaggtgatgttttgggt
ctaacgccgtctacgaacagtagtttagcaattaaagctctgggaggctgtgtagcattt
ctcacggaatgtttgcttgatatacaaattttaggtatgtctcagttctctgaatataca
ccccctgacgtgctaaacatgactttgcaaaatgagaagacccaatggactggtggtagt
actatggtcttggattctattacgttgagaaatctacgtatagtacaggatgaggggtgt
ctctatgataaattgaatttatgctctacccctatgggaaaaagattactatatcaatgg
gtatgttccccgagctgtgatttgacagtgatcaaggaacgtcaaaaagccatcaaaact
ttatttgaaaatcaggacatctgtcaagaggccaagagcttgctgacaacgttgccagat
ctggaacggcttttggctaaagtccacgccctcgggaacttgaagaaatcaaaagatcat
cccgattcgagagctattttatatgaagagaagacttattcgaaaaaaaaagtactggat
tttatttcggtactcaatgggtatactgctgcattgaagctgacagaattattctgcgat
actgactctgccttattgaagaggatcacacagctatcaccggacgggaaatatcctgat
tatagagagactttgaagttctttaaggaaggcttcaatcaaactcaagcggagaaggaa
ggaaaaattttgccggaggcaggtgtggaccaagagtatgacaacaccttggagctgata
gaagaaattgagcaggagctgaaggaatacttggtggagcaggagaaatacttcaaatgc
aggataaaatatgtgggtagtgataaaaagagataccaaatggaaataccgcaaaatgcc
gcatccaaagcaggaggagattatcatatggaaggagctagaaagggatttaagagatat
tctactgccgagacaaaggacttcctcgcacgcatgatggcggccgaagagcaaaaacgc
gtagtactaaaggatctcagtcgtagaatatttgagaaattctccagtcattattcgcaa
tgggccgctgccgtacagtgcgtggcgacgctcgatgtgttactgtcgctttgcgaattc
gctagacaacagacgagcgatatttgtttgcctgagcttacatttggcgatactcagccc
tacataagcatagtagaaggccgtcacccctgcataccaattgtgaacgatttcatccca
aacgatacatcccttggggagaacggagcgagtttgttattactaacgggacctaatatg
ggcggaaagtcaactctaatgagacaagttggactattaactgtcctttcgcatttggga
agctacgtcccagcccaggaatgtaagctcagtttagtggatcgcatcttcactcgttta
ggggcttctgatgatattttgtccggtcattccacattcctggtggagatgaatgagacg
gcggccattattaaacacgcctcgttgcattccctggtgttgttggatgaattaggtcgc
ggcacaagtacatacgacggtacggccatagcgagtggtgtgtgtgtggaattggcagag
cgtggatgtagagtgttgttctccacacattatcacacactcgtcacacaccttgcgaca
caccctaatgtgcaactggggcatatggcatgtatggtagaaacagaggaaacggaaaga
gatgatatcccagaagaaacaataaccttcttatacaaactgagccctggtgcttgtcca
aaatcttatgggtttaatgccgcaaaattagctgggatcccgcaagaaataacgcgtcga
gcgcgaaatatatcgaaaaaactcgaaactgaagctaatctaataagggctttcaaagaa
attatgaaggttggtcaagtgtcaaatatgagaacacttctcgctgagttgacaatttaa
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