Pseudomonas cannabina pv. alisalensis: JGS08_22275
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Entry
JGS08_22275 CDS
T07379
Symbol
garD
Name
(GenBank) galactarate dehydratase
KO
K01708
galactarate dehydratase [EC:
4.2.1.42
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab00053
Ascorbate and aldarate metabolism
pcab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00053 Ascorbate and aldarate metabolism
JGS08_22275 (garD)
Enzymes [BR:
pcab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.42 galactarate dehydratase
JGS08_22275 (garD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GD_AH_C
GD_AH_second
SAF
Motif
Other DBs
NCBI-ProteinID:
QQN21273
LinkDB
All DBs
Position
complement(4968170..4969723)
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AA seq
517 aa
AA seq
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MNLIQHADSPRYIRLHPLDNVVVVVNDQGVPAGTEFDNGLVTVDNVPQSHKVSTVDLAVG
EAIIRYGHTIGYALQPIPRGSWVREDQLRMPSAPALDSLPMSDAVPEKQAPLEGYTFEGY
RNADGTVGTRNILGITTTVQCVTGVLDHAVKRIRDELLPKYPNVDDVVALTHSYGCGVAI
TATDAYIPIRTVRNLARNPNLGGEALVISLGCEKLQAGQVMHEGDSSVDLSDPWLYRLQD
SSHGFNEMIEQIMELAETRLKKLDLRRRETVPASELILGMQCGGSDAFSGITANPALGYA
SDLLLRAGATVMFSEVTEVRDAIYLLTSRAQDQDVAQALVREMDWYDRYLAKGEADRSAN
TTPGNKKGGLSNIVEKSLGSIVKSGSSAINGVLGPGERVSGKGLIFCATPASDFVCGTLQ
LAAGMNLHVFTTGRGTPYGLAMAPVVKVSTRTELAQRWPDLIDIDAGRIATGRASIEDLG
WELFHFYLDVASGKKKTWTEHYRLHNDITLFNPAPIT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgattcaacatgccgattctccacgctacatccggctgcatccgctggataac
gtcgtggtcgtggtcaacgaccagggcgtgccggccgggaccgagttcgacaacggcctg
gtgaccgtcgataacgtgccgcagagccacaaggtcagcaccgtggatctggcggtcggc
gaggcgattattcgttacggccataccattggttacgcgctgcaaccgatcccgcgcggc
agttgggtcagggaagatcaactgcgcatgccgtctgcgcctgcgctcgacagcctgccg
atgtccgacgcggtgccggagaaacaggcgccgcttgaaggctataccttcgaaggctac
cgcaatgccgacggcacggtgggtacccggaacattctgggcattaccaccaccgtgcag
tgcgtgaccggcgtgctggatcatgcggtcaaacgcattcgtgacgaattgttgcccaag
tacccgaacgttgacgacgtggtggcgctgacccacagctacggctgtggtgtggcgatc
actgccaccgatgcctacatcccgattcgcaccgtgcgcaatctggcgcgcaacccgaat
ctgggcggcgaagcgctggtcatcagcctgggctgcgagaaattgcaggccggacaggtc
atgcacgaaggcgacagctcggtggacctgagcgatccctggttgtaccggcttcaggac
tccagccacggcttcaatgaaatgatcgagcagatcatggaactggccgagacacgcctg
aagaaactggatctgcgtcgtcgcgagaccgttccggcctcggagctgatccttggcatg
caatgcggcggcagtgatgcgttttccggcatcaccgccaacccggcgctgggctatgcc
tcggacctgctgttgcgtgctggcgcgacggtgatgttttccgaagtgactgaagtgcgt
gatgccatttatctgctgacctcccgtgcgcaggaccaggacgtcgctcaggcgctggtt
cgcgagatggactggtacgatcgctatctggccaaaggcgaggcggatcgcagcgccaac
accacgccgggtaacaagaagggcgggttgtcgaacattgtcgaaaaatccctggggtcg
atcgtcaaatccggcagcagcgcgatcaatggcgtgcttggccctggtgaacgggtcagc
ggcaaaggcctgatcttctgcgccacgccggccagtgattttgtctgcggcacgctgcaa
ctggccgccgggatgaacctgcacgtattcaccaccgggcgcggtactccgtatggtctg
gcgatggctccggtggtcaaggtgtcgacccgcactgaactggcccagcgctggcccgac
ctgatcgatatcgacgccggccgcatcgccaccggacgcgccagcatcgaggatctgggc
tgggagttgttccacttctatctggacgtggccagcggcaagaaaaaaacctggaccgag
cactaccgcctgcacaacgacattaccctgttcaacccggcaccgattacctga
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