Physeter catodon (sperm whale): 102976442
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Entry
102976442 CDS
T06011
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
pcad
Physeter catodon (sperm whale)
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcad03016
]
102976442 (CDKAL1)
Enzymes [BR:
pcad01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
102976442 (CDKAL1)
Transfer RNA biogenesis [BR:
pcad03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
102976442 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
102976442
NCBI-ProteinID:
XP_023977591
Ensembl:
ENSPCTG00005016829
UniProt:
A0A2Y9SMI3
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All DBs
Position
18:complement(91926230..92604607)
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AA seq
578 aa
AA seq
DB search
MPSASCDTLLDDIEDIVSQEDSKPQDRHFARKHVVPKVRRRNTQKYLQDENSPPRDSTIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASEADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLSQ
KKDNGKRLGGARLDLPKIRRNPLIEIISINTGCLNACTYCKTKHARGNLASYPVDELVDR
AKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATD
IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLS
QVFHSYNPYDHKIGERQKVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVNVYE
SGKHFMKGQPVSDAKVYAPSISKPLAKGEISGLTEEFRNRLGNHLNSVSRTLDATQRDPA
SSRMALQLQRLHQDCALRMSVVLALFAFLFAFLIKVYN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcatcctgtgatacactcctggatgacatagaagatatagtgtcacaagaa
gattcaaagccccaagataggcattttgcgagaaagcatgttgttccaaaggtgcgaagg
cgaaatacccaaaaatatttgcaagacgaaaacagtccaccaagagatagcactattcca
ggcatacagaaaatttggatacgaacttggggttgttctcataataattcagatggagaa
tatatggctggacaactagctgcttatggatataaaattacagaaaatgcatcagaggca
gacttatggctcctgaatagttgtactgtaaaaaatccggctgaagaccactttagaaac
tcaattaaaaaagctcaagaggagaacaagaaaatagtgcttgctggatgtgttcctcaa
gcgcagcctcgtcaggactaccttaaagggctgagcatcataggggttcaacagatagat
cgtgtggtagaagttgtggaggaaacaattaaaggtcactctgtgagactgctgagtcag
aaaaaggataatggaaaacggttggggggagcacgactggatttgccaaagattaggagg
aatccactgatagaaatcatttccatcaatactgggtgtctcaatgcttgtacctactgc
aaaaccaaacacgccagaggaaatttggccagttatccagttgatgagttagtagataga
gccaaacagtcttttcaagagggtgtttgtgaaatatggttgaccagtgaagacacaggg
gcttatggcagagatattggcaccagtcttcccgcactgctgtggaagctggttgaagtg
attcctgagggagcaatgctgaggcttggcatgacaaatccgccctatattttagagcat
ctggaggaaatggcaaaaatccttaatcacccccgagtctatgcctttctgcacatacca
gtccagtctgcctctgacactgtgctcatggaaatgaaaagagaatactgcgtggctgac
ttcaaaagagtagtggattttctgaaagacaaagttcctggaataactattgctacagac
attatctgtggttttcctggagaaacagaccaagattttcaagaaacagtgaaacttgtt
gaagagtacaaatttccaagtctctttattaaccaattttacccaagaccaggaactccc
gctgcaaaaatggaacaagttccagcgcaagtgaaaaagcaaagaacaaaagatctttct
caagtatttcattcttacaatccatatgatcacaagattggtgagagacaaaaagtgtta
gtcacagaagaatcttttgattccaagttttatgttgcacacaatcgattctatgagcag
gttttagtgccaaagaaccccacattcatggggaaaatggtcgaagtgaacgtttatgaa
tcaggaaaacattttatgaaagggcagccagtttcagatgccaaagtatatgcgccatcc
atcagcaaaccattagcaaaaggagaaatctcaggtttaacagaggaattcagaaatagg
cttgggaaccacctgaattcagtatcccgcaccttggatgcaactcagcgagacccggcg
agttccagaatggcgctacaactgcaaaggctgcaccaggactgtgcgctgaggatgtct
gtggtcctggctctgtttgcttttctttttgcttttttgatcaaggtctataattaa
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