Physeter catodon (sperm whale): 102989947
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Entry
102989947 CDS
T06011
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03020
RNA polymerase
pcad03420
Nucleotide excision repair
pcad05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102989947 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
102989947 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
102989947 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102989947 (POLR2A)
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102989947 (POLR2A)
Enzymes [BR:
pcad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102989947 (POLR2A)
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102989947 (POLR2A)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102989947 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
102989947
NCBI-ProteinID:
XP_007100715
Ensembl:
ENSPCTG00005015012
UniProt:
A0A2Y9EF47
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPSPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPT
NT seq
5851 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggc
atcaaatacccagagaccactgagggaggccgccccaagcttggggggctgatggatccg
aggcagggggtgattgagaggactggccgctgccaaacctgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgttccacgtcggcttcctg
gtcaagacaatgaaagtgttgcgctgcgtctgcttcttctgctccaaactgcttgtggac
tctaacaacccaaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
ctcacacacgtctatgacctctgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaagttcggcgtggagcagcctgagggcgatgaggatttgaccaaggaaaagggc
catggcggctgtggacggtaccagcccaggatccggcgctctggcctggagctgtatgca
gagtggaagcacgtcaacgaggactctcaggagaagaagatcctgctgagtcctgagcgg
gtgcacgagatcttcaaacgcatctcggatgaggagtgcttcgtcctgggcatggagcct
cgctacgcccggcctgagtggatgattgtcaccgtgctgcctgtgcccccgctctccgtg
cggcccgccgttgtgatgcagggctctgcccgcaaccaggatgacctgacacacaaactg
gccgacatcgtgaagatcaacaatcagcttcggcgcaacgagcagaacggcgcggccgcc
catgtcatcgctgaggacgtgaagctcctccagttccacgtggccaccatggtggacaac
gagctgcctggcttgcctcgtgccatgcagaagtctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgtgtgcgtgggaacctgatgggcaagcgggtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgctccattgccgccaatatgacctttgcggagatcgtcacccccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggggctaagtacatcatc
cgggacaacggtgatcgcattgacctgcgtttccaccccaagcccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgatggggacattgttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatggggcatcgggttcgcatcctgccctggtct
acttttcgcttgaatcttagtgtaacaactccgtacaatgccgattttgatggggatgag
atgaacttgcacctgccacagtccctggagacgcgggccgagatccaggagctcgccatg
gtgccacgcatgattgtcaccccccagagcaatcgcccggttatgggcatcgtgcaggac
acgctgaccgcagtgcgcaaattcaccaagagggacgttttcctggagcggggggaggtg
atgaacctcctgatgttcctgtccacgtgggatggcaaggtcccacagccagccatcctg
aagccccggcccctgtggacagggaagcagatcttctccctcatcatacctggccacatc
aactgtatccgcacccacagcacccatcccgacgatgaggatagtggcccttacaagcac
atctcccccggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtctttgggcacatcagctggctccctggtccacatctcttacctagagatg
ggtcatgacatcacccgcctcttctactccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacttaccaa
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcatcgagaaggcg
cataacaacgagctggagcccaccccggggaacactctgcggcagacctttgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaacaactttaagtcaatggttgtgtccggggctaaaggttccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggatcccgttt
gggttcaagcaccggactctgcctcacttcatcaaagatgactatgggcctgagagccgt
ggctttgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcattgacacagctgtcaagactgctgagactggatacatc
cagcggcggctgatcaaatccatggagtcggtgatggtgaagtatgatgccaccgtgcgg
aactccatcaatcaggtggtacagctgcgctatggtgaagacggcctggcgggcgagagc
gttgagttccagaacctggctaccctcaagccttccaacaaggctttcgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcaccctgcaggaggacgtggtgaag
gacgtgctgagcaacgcacacattcagaatgagctggagcgagaatttgagcggatgcgt
gaggaccgggaggtgctcagggtcatcttcccaactggtgacagcaaggttgtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctctgacctgcaccccatcaaggtggtagagggggtcaaggagctgagcaagaagctg
gtgattgtgaatggggacgacccactgagccggcaggcccaggagaacgccaccctgctc
ttcaacatccacctgcggtccacgctgtgctcccgccgcatggccgaggagtttcggctc
agcggagaggccttcgactggctgctcggggagatcgagtccaagttcaaccaagccatt
gcccatcctggggagatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgaccctgaacaccttccactatgctggtgtgtccgccaagaatgtgaccctgggt
gtaccccgactcaaggagctcatcaacatttccaagaagccaaagaccccctcacttact
gtcttcctgctgggccagtctgctcgagatgctgagagagccaaggatattctgtgccgc
ctggaacatacaacgttgaggaaggtgactgccaacacggccatctactacgaccccagc
ccccagagcacggtggtggcagaggatcaggagtgggtgaatgtctactacgagatgccc
gactttgatgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgatcggaagctgaccatggagcagattgccgaaaagatcaatgctggtttcggt
gatgacttgaactgcatctttaacgatgataatgcagagaagctggtgctccgtatccgc
atcatgaacagtgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gacgacgtcttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggc
attgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccttgcaggagtggatcctggagacagatggc
gtgagcctcatgcgggtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaat
gacatcgtggagatcttcacggtgctgggcatagaagccgtgcggaaggccctggagcgg
gagctgtaccacgtcatctccttcgatggttcctacgtcaattaccggcacttggctctt
ctgtgtgataccatgacctgtcgtggccacttgatggccatcacccgacacggagtcaac
cgccaggataccggacctctcatgaagtgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcacatggagagagcgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctggctccagccggcactggctgttttgacctcctgctagatgcagagaagtgc
aagtatggcatggagatccccaccaacatccccggcttgggggctgccggacccaccggc
atgttcttcggctcggcccccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggcgcaaccccagcctacggcgcctggtcccccagtgttgggagcgggatgacc
ccgggggcagcaggcttctctcccagtgctgcttcagatgccagcggcttcagccctggt
tactccccggcctggtctcccacgccgggttccccgggctccccaggcccctcaagcccg
tatatcccttcaccagggggtgccatgtctcccagctactccccgacgtctcctgcctac
gagccccgctcccctgggggctacactccccagagtccctcttactcccccacttcaccc
tcctactcccctacatctccatcctattctccaaccagccccaactacagccccacgtca
cccagctactccccgacctcgcccagctactccccgacctcacccagctactccccgacc
tcgcccagctactccccgacctcgcccagctattccccgacctcgcccagctactcgccc
acttcccccagctactcgcccacatcccccagctactcgccaacctctcccagctactcg
cccacctctcccagttactcgccaacttcacccagctactcgcccacctcacccagctac
tcgccgacatctccaagctactcgccgacatcacccagctactcaccaacttccccaagt
tactcgcccaccagccctaactattctccaaccagtcccaattacaccccaacgtcaccg
agctacagcccaacatcccctagctactcgcctactagtcccaactacacaccaacgagc
cccaactacagcccaacctctccaagctactctccgacttcacccagctactccccgacc
tcaccgagctactccccttcgagcccacgatacacaccacagtctcccacctataccccg
agctcacccagctacagccccagctcgcccagctacagcccgacctcaccgaagtacacc
ccaaccagtccttcctacagccccagctcaccggagtacaccccgacctctcccaagtac
tcacctaccagcccgaaatattcgcccacctcccccaagtactctccgaccagccccacc
tactcgcccaccactccgaaatactcgccgacgtctcctacttactcaccaacctctccg
gtctacaccccaacctcccccaagtactcgcccaccagccccacctactcgcccacctcc
cccaagtactcgcccaccagccccacctactcgcccacctcccccaaaggctcaacctac
tcgcccacctcccctggctactcgcccacca
DBGET
integrated database retrieval system
