Pseudomonas carboxydohydrogena: AFIC_001703
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Entry
AFIC_001703 CDS
T08963
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcax03009
]
AFIC_001703 (rimO)
Enzymes [BR:
pcax01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
AFIC_001703 (rimO)
Ribosome biogenesis [BR:
pcax03009
]
Prokaryotic type
ribosomal protein modification factors
AFIC_001703 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
NTPase_1
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WEF50179
LinkDB
All DBs
Position
complement(1734759..1736081)
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AA seq
440 aa
AA seq
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MTTASAPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQ
ESLGAIGEAMAENGKVIVTGCMGAEPEQIEKEYPNVLSITGPQQYESVLDAVHRALPPMH
NPHLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPASDVLREAEKLV
AAGVKELLVVSQDTSAYGIDIKYESSPWKDREVRAKFLDLARELGELGAWVRLQYVYPYP
HVDDVIPLMGGNILPYLDIPFQHANTEVLKRMRRPAAQDKTLARIHKWREQCPDLTLRST
FIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYEPVAGATSNTLDKPVPDEIKTVRWNAL
MARQQKISARRLKRKVGTRQQIIIDEIGPSVAKGRSKADAPQIDGSVYVASRRPLKVGDI
VTAKIERADEYDLHGSVVGF
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaccacggccagcgcgcccaaaatcagcttcgtctccctgggatgccccaaggcactg
gtggattccgagcgcatcatcacccgcctgcgcgcggagggatatgagcttgcccgcaag
cacgacggcgcggacatcgtcatcgtcaacacctgcgggtttctcgacagcgccaagcag
gaatcgctcggcgcgatcggcgaggccatggcggaaaacggcaaggtcatcgtcaccggc
tgcatgggcgccgagcccgagcagatcgaaaaggaatatccgaacgtcctgtcgatcacc
ggcccgcagcaatatgaaagcgtgctggatgccgtgcatcgtgccttgccgccgatgcac
aatccgcatctcgatctcgtgccgccgcagggcatcaagctgacgccacggcactatgcc
tatctgaagatttcagagggctgcaacaaccgctgcaccttctgcatcatcccgaagctg
cgcggcgatcttgtctcgcgtccggcgagcgacgtgctacgtgaggcagagaagctcgtc
gcggccggtgtcaaggaattgctggtcgtctcgcaggacacctcggcttacggcatcgac
atcaaatatgagtcgagtccatggaaagaccgcgaggtccgcgccaaattcctcgatctt
gcgcgtgagcttggcgaactcggcgcatgggtgcggctgcaatatgtctacccctacccg
catgtcgacgatgtcattccgctgatgggcggcaacatccttccctatctcgacattccg
ttccagcacgccaacaccgaagtgctcaagcgcatgcgccgtccggccgcgcaggacaag
acgcttgcgcgcatccacaaatggcgcgagcaatgccccgacctcacgctgcgctcgacc
ttcatcgtcggctttccgggcgagaccgaatccgaattccaggatctgctcgactggctc
gacgaggcgcagatcgaccgcctcggctgcttcaaatacgagcccgtcgcgggcgccacc
tcgaacacactcgacaagcccgtgcctgacgagatcaagaccgtgcgctggaacgcgctg
atggcgcgccagcagaagatttccgcgcgtcgcttgaagcgcaaggtcggcacccgccag
caaatcatcatcgacgagatcgggccaagcgtcgcaaagggccgctctaaggccgacgcg
ccgcagatcgacggttcggtctatgtcgcgagccgccgtccgctgaaggtcggcgacatc
gttaccgcgaagatcgaacgcgcggacgaatacgacctgcacggcagcgttgtggggttt
taa
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